3300007806: Human stool microbial communities from NIH, USA - visit 1, subject 764042746 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007806
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052873 | Ga0105890
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 764042746 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 79849403
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F055775	Metagenome	138	N
F073656	Metagenome	120	N
F080163	Metagenome	115	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105890_100487	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	27472
Ga0105890_100622	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	20861
Ga0105890_104498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	2362
Ga0105890_108595	All Organisms → cellular organisms → Bacteria	1092

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105890_100487	Ga0105890_10048721	F055775	MAQIAQQDNLVIEVTTTTAALEDATKKKLIECIEGGTITDVILVTKEAEKKISHARVVSWLVDTTGDSPKYTIDIINASSGAVEAIALN*
Ga0105890_100622	Ga0105890_1006226	F073656	MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVNPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGTEFHLKRH*
Ga0105890_104498	Ga0105890_1044982	F080163	MKTIKFLQESFETKERFQQEISIKYSYNQDTVESIDFRINQCNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLESINDFDRILFIIITYMKTYFDSCKDYSEINLHVHLVQFDFTTSVLIQGFYNYTTHRDLSFSTRLENNILDSEIELLQEKLDLIREELCELIGIDPDLQKKGHEENYIFNLNINSDNQIGFLLQATDL*
Ga0105890_108595	Ga0105890_1085953	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYAVLHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS*