3300007802: Human stool microbial communities from NIH, USA - visit 2, subject 159268001 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007802
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052825 | Ga0105667
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 159268001 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 161361095
• Sequencing Scaffolds: 5
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F029444	Metagenome	188	Y
F074899	Metagenome / Metatranscriptome	119	N
F078004	Metagenome	117	N
F099269	Metagenome	103	N
F101356	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105667_100639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	35705
Ga0105667_102897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	10166
Ga0105667_103502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	8165
Ga0105667_111909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1926
Ga0105667_125644	All Organisms → cellular organisms → Bacteria	805

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105667_100639	Ga0105667_10063916	F074899	MSGWKQWSKQAVTSSFLDKKPPKSLVQQGLEGSTPVGKDEVGSSNLPSSSNKAL*
Ga0105667_102897	Ga0105667_1028977	F029444	MEVSEQLTGFELEYLMSWTVSNLQRPFREVFSLEKSGIIAEKESQIFGRRFVGFDGPKKAAPFFNF*
Ga0105667_103405	Ga0105667_10340510	F078004	LSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDVHMLRRTLIITIINALYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF*
Ga0105667_103502	Ga0105667_1035021	F074899	MSGRKQWNKQTATSSFLDKKPPQSLIQQGLEGSTVVGKDEVGSSNLPSSSKKHRKLRFLV
Ga0105667_111909	Ga0105667_1119093	F099269	VGELLLLDDLGDRASGASVLASAAGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV*
Ga0105667_112764	Ga0105667_1127642	F101356	VGELMPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ*
Ga0105667_125644	Ga0105667_1256441	F026592	QTVCQNRLRTASPQGIAAQASQGGVATLTERSDATFSVMQYPPADGE*