3300007798: Human stool microbial communities from NIH, USA - visit 2, subject 160158126 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007798
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052834 | Ga0105755
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 160158126 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 133105520
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043945	Metagenome	155	N
F056623	Metagenome	137	N
F058154	Metagenome	135	N
F068855	Metagenome	124	N
F070133	Metagenome	123	N
F072366	Metagenome	121	N
F076189	Metagenome	118	N
F087334	Metagenome	110	N
F088914	Metagenome	109	N
F090515	Metagenome	108	N
F102166	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105755_100369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	51803
Ga0105755_102326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	9310
Ga0105755_104110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4340
Ga0105755_105343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3169
Ga0105755_105750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2930
Ga0105755_109567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1706
Ga0105755_110196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1603
Ga0105755_115550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1049
Ga0105755_117366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	939
Ga0105755_117898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	912
Ga0105755_129733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	542

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105755_100369	Ga0105755_10036916	F068855	VEAQGPQVRKSLAPQGLQDEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW*
Ga0105755_102326	Ga0105755_1023268	F087334	MASRYPFVGAVAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEYREKHP*
Ga0105755_104110	Ga0105755_1041102	F088914	VGRILPVYSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIVTELTDGRVSDRLFSVPYTPKENIKNPGKFIVFSAWYAAKALEMDVK*
Ga0105755_105343	Ga0105755_1053432	F070133	MKEEKRMKRLLGLLLAMMVMMGGMAGAQASTDNASMQLIRMNPLAFRKEPVGLYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEKIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTIKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADITTIEMDEKSHSYFVCSYSISAGE*
Ga0105755_105750	Ga0105755_1057502	F090515	VTTCCKAGHKTTLQGTAPGRVACLEFAEGEKRKTNIAADYAVKVPAFTALLCRYIGSIRTFLKS*
Ga0105755_109567	Ga0105755_1095672	F072366	MLDILAIKADVYQLERQGKRLPVYRYLREVWQKEPPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRAKKRFLWQICYYVNAWATFYYIFGREITQDNVEQWTKTLFEEAKERYPDSMLFEFIPHAAQLDYVWFYRLTDEKRLQIRLEVGEWNLQKNDMDQAVQSDFDDAMTWYRDNGRKLLEAKNKTNN*
Ga0105755_110196	Ga0105755_1101962	F102166	MPIRQRNDRKNPLHVALTHAIMEETWRISPEMRVFLMKKLFSLLLVLALALMPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTSLALNTLEEMVDYITEIANGESADNVFAMWQADIGAV*
Ga0105755_115550	Ga0105755_1155501	F058154	LTVGTNEERNLATYLGLALTAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGTGAFVRVPVPAQSRLRYQPYLLPPEDASRHDVTLYTLCPLLYGGALAVVFGVLPLLTLGQPVSLVLCELAMGGVVLVMTCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTTLYRGKAGAAIRQVMFRMVDYALPAYAVAMLVTHEAREAEVVRNTLAPVREKMPELDALMKAIEEKAARIES*
Ga0105755_117366	Ga0105755_1173661	F056623	VQTPFPCRSLRQAAVGRLQPAGQAGLTSETAPARRQLLHLLYAREAAALQSMTLVRAEIPATQKRDWKPLILPLAAAVLNLGALALWLTLPSCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVAVADEPELRRRLVEAEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVACEAVDYTPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG*
Ga0105755_117898	Ga0105755_1178981	F043945	EVVCNLEDIIWSEALKQSGYYGQVMLLDGGAELVLFSANEGRLYSFVPPTDDTTVRMQMVAGLDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAENGLYVIAKDKTDEYQIIRFDVDTGKGEMMEFALEDEEDSHLMPDMPGFFRWSAESSKYERVLYDGKELTTVNLPNGEATSVVHNLVNTLTLQPIQDYDVTLGDYVTHDAYYAYAPNKDNTAMYFVHDNTVWVMEYDEENSQFSEPRGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDATARAYLYGEVE*
Ga0105755_129733	Ga0105755_1297331	F076189	GIAFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSAQKQLRMLYNFHENTFGLLIFYANYAIL*