3300007795: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158458797 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007795
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052805 | Ga0105644
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158458797 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 74647771
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054110	Metagenome	140	N
F066860	Metagenome	126	N
F076191	Metagenome	118	N
F078842	Metagenome	116	N
F089055	Metagenome	109	Y
F103436	Metagenome	101	Y
F105376	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105644_100284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	28969
Ga0105644_103130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	3990
Ga0105644_103986	Not Available	3164
Ga0105644_104560	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	2772
Ga0105644_106673	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1920
Ga0105644_109013	Not Available	1404
Ga0105644_113154	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	951

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105644_100284	Ga0105644_10028433	F054110	VFNVNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVRTYKGGD*
Ga0105644_103130	Ga0105644_1031305	F103436	MTTSKDGWCDDKSDAEILENLKDWVSKCDVSYKREALKKIDSAFALWGNDEYVSAVRLLDENEVFLKKSDWPYYALGIEILKARKHEFFNE*
Ga0105644_103986	Ga0105644_1039865	F105376	VVVFLWGKIMNEKPEVSAKEFGALGADVIHIKESVDRHTVTLERIENIARANVTQAQLKAYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQTVRRK*
Ga0105644_104560	Ga0105644_1045602	F078842	MIISSIYKIADNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSPEVKKTYDEALREFDKLVISEDDILRAASECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGSLKKDDKIINQLSYDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMANSARIRQMINSIELDVYEVNS*
Ga0105644_106673	Ga0105644_1066732	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSFARGFIPGIGGWVLALLAPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFKTSKTIAIISGFVVVLSLFVAVTFGIAEDKE*
Ga0105644_109013	Ga0105644_1090131	F076191	IKALSDELVNQDNRSTSMPMWTILDNNKAGKDYGAVMYFTGKAAEQHIEENGHHYDNPTTCVRSAHDNRELKDIVHLLILAGGNEIPSNHYGVLRDA*
Ga0105644_113154	Ga0105644_1131542	F089055	LKVEKMNSTPECVTKTPEIEAREKLAAIFSDTEQRDNSKVNPELGKTAIDIENTSRMNSADNGAVDFCNQALGSYEKSLYHINNGPLETVQTIGISLQRLREYKTEGSCR*