3300007787: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159611913 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007787
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052785 | Ga0105572
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159611913 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 53377603
• Sequencing Scaffolds: 7
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F051214	Metagenome	144	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F081510	Metagenome	114	N
F103431	Metagenome	101	N
F103434	Metagenome	101	N
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105572_100058	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	56938
Ga0105572_100086	Not Available	38828
Ga0105572_107125	All Organisms → cellular organisms → Bacteria → Proteobacteria	1273
Ga0105572_107348	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1245
Ga0105572_109921	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	971
Ga0105572_111613	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	853
Ga0105572_121744	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	514

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105572_100058	Ga0105572_10005816	F081510	MLSKTKGETKMKLPNMKTIKSAAKHSYTVSKILAKKYAPVALVTTGLVGYGVAVYKGIQSGKKLEATKAKYEAKDEAGEEYTRMDVVKDVAKDVAVPVAIAVASTAAIGLGFAIQTNRLKAVSAALTMVTEEHARYRLRAKEVLDEETFKKIDAPIETKKVEIDGKEVEVESIVPKEGDFYGRWFKYSRHYASDDPDYNEAWVKEVDNMLTQKINTQSGGGMLTFAEVLDALGFEVPKAALPFGWTDTDGFYLEWDTHEVWNEDKQEHEPQIYVRWQTPRNLYSTTNLRDIIPGRKELA*
Ga0105572_100086	Ga0105572_10008612	F105378	MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKSKWNNKLNAPVPMQDHLENNQIGYDSINSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTADSISIYNTGSFTGSFQCLIVYPLGSVNE*
Ga0105572_107125	Ga0105572_1071252	F103431	MIDFDALIVGMLFFIQLFLQSIAWRVAIAHFLHAERGNAAAAAFDGAFGEDIADCHAEDDDDKDAESQKEGFHVCIPEG*
Ga0105572_107348	Ga0105572_1073482	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITTKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0105572_107348	Ga0105572_1073483	F071329	MRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASTIVAREVEKQFDETVKAVKEARDHIEIED*
Ga0105572_109921	Ga0105572_1099211	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEEQKTYSAKEYYDYWAAREGRPAPFFYEARQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAAD
Ga0105572_109921	Ga0105572_1099212	F027205	GGPPTLERTHVASRLIVTADDIMRAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIKRSTK*
Ga0105572_111613	Ga0105572_1116132	F103434	MVTFRPRRGRYLENGPHAVEVTVAIVSEGRTGRRYAPGETFYVDKVLVQPSAGNALKATENRAIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPPSLEGKTFQQAGEPLTYDASPMTRHFSVRCDTLGTVAK*
Ga0105572_121744	Ga0105572_1217441	F067847	DDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQQDPKYKELDSKLKETELNNL*