3300007774: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159611913 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007774
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052787 | Ga0105576
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159611913 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 15588995
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051214	Metagenome	144	N
F081456	Metagenome	114	N
F103436	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105576_100393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	3468
Ga0105576_103268	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	942
Ga0105576_106643	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	582

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105576_100393	Ga0105576_1003935	F103436	MIVASKKSWCYQSENEIFDSLRDLVLTCDLKYSKEDALGKIDRASALWGGADYVTSVHLLDENEPYFKKSDWPYYALGLEVLKSRKREFFDE*
Ga0105576_103268	Ga0105576_1032682	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDIAIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0105576_106643	Ga0105576_1066431	F081456	MFEEPPIYYILISLIFLIVFGAVSFATWLVWLTPVSFMAKLVMTAIGFLLCAITVILYTISAE*