3300007748: Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', co15aic 200bp-25jan2016

Overview

Basic Information

• IMG/M Taxon OID: 3300007748
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117787 | Gp0124802 | Ga0105545
• Sample Name: Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', co15aic 200bp-25jan2016
• Sequencing Status: Finished
• Sequencing Center: University of New South Wales
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 112952298
• Sequencing Scaffolds: 23
• Novel Protein Genes: 25
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	18
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Calotrichaceae → Calothrix → Calothrix elsteri → Calothrix elsteri CCALA 953	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium	1
All Organisms → cellular organisms → Bacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
• Type: Host-Associated
• Taxonomy: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Coelocarteria Singaporensis (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Upa-Upasina CO2 seeps 'control' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.828217
  • Long. (^o): 150.820517
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001905	Metagenome	619	Y
F003751	Metagenome / Metatranscriptome	470	Y
F013419	Metagenome	271	Y
F028775	Metagenome	190	Y
F036270	Metagenome	170	Y
F038198	Metagenome	166	Y
F058218	Metagenome	135	N
F058913	Metagenome	134	Y
F067815	Metagenome	125	Y
F072439	Metagenome	121	N
F080142	Metagenome	115	Y
F085224	Metagenome	111	N
F085818	Metagenome	111	N
F098230	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105545_1009968	Not Available	1552
Ga0105545_1015350	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1215
Ga0105545_1018315	Not Available	1103
Ga0105545_1022171	Not Available	992
Ga0105545_1023752	Not Available	953
Ga0105545_1025354	Not Available	919
Ga0105545_1027512	Not Available	878
Ga0105545_1035886	Not Available	755
Ga0105545_1042809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Calotrichaceae → Calothrix → Calothrix elsteri → Calothrix elsteri CCALA 953	678
Ga0105545_1047984	Not Available	630
Ga0105545_1053807	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium	583
Ga0105545_1054822	Not Available	576
Ga0105545_1055929	Not Available	568
Ga0105545_1056468	All Organisms → cellular organisms → Bacteria	564
Ga0105545_1056687	Not Available	563
Ga0105545_1056981	Not Available	561
Ga0105545_1057157	All Organisms → cellular organisms → Bacteria	560
Ga0105545_1057215	Not Available	559
Ga0105545_1058264	Not Available	552
Ga0105545_1058989	Not Available	548
Ga0105545_1060555	Not Available	538
Ga0105545_1063876	Not Available	518
Ga0105545_1065308	Not Available	510

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105545_1009968	Ga0105545_10099681	F085224	MLELLELGVPMFYPSKSLLKRWDGRYGMMWHRTDYYGQRKAGGFSNIAYGKDSAPDPNDSVNREALHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIKRDLTKTSSTPA*
Ga0105545_1015350	Ga0105545_10153502	F003751	MASYTAEKGAILQPGNQINRLSSYNTEGVFGWPGFELYEMVGYVKVDNLSADKADNKSFNLTVPSPDRRSSDRVRDDRTSLVVQADADRPAYIYSASIAIGQDIPSAGEPSYPATPLTADIDGTNTEILLFGPDNSGSPRGVPATQADGLAAATAITTAFASGTIAQGESDVSVAEAPFWTSVTTAGIDDQDAANSMMYRVTSDTTFKVYNVNGVTSTTVDGDGVFISSADKDAGKAAYIICRVTYLRPAAATTCMDIVGSLDFASQVGGSDS*
Ga0105545_1018315	Ga0105545_10183152	F080142	MKVGAGEFIKTDSGEVIWGSEAFIDEVFKTLYGDDFRNEIWSYNDALQKIKNLVQQVEIKQ*
Ga0105545_1018315	Ga0105545_10183153	F058913	MKLTKEEARWLDDKWNDFYYYFQVEDMFEKDQELFRSIGKKLSEVKQ*
Ga0105545_1018315	Ga0105545_10183154	F036270	MHIESTDKQGVFRACKDGHKLLELINDMGWDYDRFSSSGQETYDKICTILATVKEVKDETN*
Ga0105545_1022171	Ga0105545_10221712	F085224	SVFSGMMLELIQMGVPMFYPSKSLLKRWDEKYGMMFHRTNAFGERRAGGFSNIAYGKDSAPDPNDSVNQDALHYWLDKSEFYYWDVRCFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDARWAEIRRDLVKTSSTPA*
Ga0105545_1023752	Ga0105545_10237522	F085224	MLELIEMGVPMFYPSKSLLKRWDESYGMMFHRTHEFGSGRSAGGFSNIAYGADSAPDPNDSVNPDALHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRNERWAEIKRDLTKTSSTPA*
Ga0105545_1025354	Ga0105545_10253541	F085224	MFPYSVFSVTMLELLQMGVPMYYPSKSLLKRWDERYGMMWHRTNSFRQRRAGGFSNIAYGKGSMPDPNDSVNRDALHYWLEKAEFYNWDVRYFDSPADLHEQLKQADFEAMHRDVLKTRARMDKIRDARWAEIRRDLAKSNSTPA*
Ga0105545_1027512	Ga0105545_10275122	F098230	MTDSIIMAIYILCGLTIAAFGILLTGFYYFGDLTMPGIFAWVAPLMIPLGIVTIIVGEREAR*
Ga0105545_1035886	Ga0105545_10358862	F085224	RPARLRHPRAHFRDYVTGISEAFNNFSYRDLLRFKAVVMFPYSVYSGVMIELIQMGVPMFYPSKRLLKRWDEKYGMMFHRTNAFGERRAGGFSNIAYGKDSAPDPNDSVNREALHYWLEKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDTRWAEIRRDLTKTSSTPA*
Ga0105545_1042809	Ga0105545_10428092	F013419	MRESKYSFLYRNSDGHVMRPESFLNINKGRTLSSSQLRMLGIEKIKNPSYKRQATSIKRQAAST*
Ga0105545_1047984	Ga0105545_10479842	F085224	FSYQDLLRFKAIVMFPYSIWSGVMLELLEMGVPMFYPSKILLKRWHERYEMVYQRSSGGRRSAGGFSNIAYGADSAPDPNDGVNREALHYWLDKSEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIKRDLAKTSSTPA*
Ga0105545_1053807	Ga0105545_10538072	F072439	MSVLPRTQLGYTLGIRRDKDITSQGEKVPKNPFEESRGRTRMAGEKRVDIFAVRPDEAPFSYTKGTNLPKRFTQTLDIPIEKEEEA*
Ga0105545_1054822	Ga0105545_10548222	F085224	YPSKSLLKRWDESYGMMFHRTNAFRERRAGGFSNIAYGADSAPDPNDSVNPEALHYWLDKAEFYNWDVRYFGSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIKRDLTKTSSTPA*
Ga0105545_1055929	Ga0105545_10559291	F085224	MVELLQMGVPMFYPSKSLLKRWDESYGMMFHRTNAFGERRAGGFSNVAYGKGAMPDPNDSVNREALHYWLEKSEWYNWDVRYFDSPADLHEKLKAADFEAMHRDVLKTRARMDKIRDERWAEIRRDLTKTA*
Ga0105545_1056468	Ga0105545_10564682	F067815	MENVNSTFLVLKIREDKNPKGETEITVAKGFDTLTDAKKYKDAKDSIERLTPMEYWVTSYKIQQIFYKSFVQTEKNSWKDLVSV*
Ga0105545_1056687	Ga0105545_10566871	F038198	QTKQYRYNKFLQVAMAIEKVTLKNVRVTVNFDIDLDTLKRYLETKERDFDDVMAIYDMICTQSDRLNEQGEPENIRAYFCIDPETYVLLEQQVKADLKKSYVTDSDHPHLRRIK*
Ga0105545_1056981	Ga0105545_10569812	F085224	FPYSAFSGIMLELLEMGVPMFYPSKRLLKRWDESYGMMFQRTSGYGRRSSGGFSNIAYGKDLMPDPNDGVNREALHYWLEKSEWYNWDVRYFDSPADLHEQLKQADFEALHRDVLKTRARMDKIRDERWAEIRRDLTKTA*
Ga0105545_1057157	Ga0105545_10571572	F001905	MTILLCVGGFSPIMIHHIIMKLWDVSTLRAAEFTFIVCIPIAFWMAEKINERWNDEDQ*
Ga0105545_1057215	Ga0105545_10572151	F085224	RAALNGFSYQDLLRFKAIVMFPYSAFSGIMLELIEMGVPMFYPSKSLLKRWDESYGMMFQRTSGYGRRSSGGFSNIAYGKDLMPDPNDGVNREALHYWLEKSEWYNWDVRYFDSPADLHEQLKQADFEALHRDVLKTRARMDKIRDERWAEIKCDLTKTA*
Ga0105545_1058264	Ga0105545_10582641	F085224	GMMFHRTNAFGERRAGGFSNVAYGKGSMPDPNDGVNREALHYWLEKAEFYNWDVRYFDSPADLHEQLKAADFKAMHRDVLKTRARMDKIRDERWAEIKRDLAKTSSTPA*
Ga0105545_1058989	Ga0105545_10589892	F058218	MFSKQYRQRYKDALKLQRWPLVDTAKMEKEKKEKDRQARLRRLYGLSDDKLKT*
Ga0105545_1060555	Ga0105545_10605551	F028775	LKELKQKAKDVVMESGTPDSLAIALDQVSKKIGLRWNQDLQALPNFKN*
Ga0105545_1063876	Ga0105545_10638761	F085224	RAALNGFSYQDLLRFKAIVMFPHSTFSGIMLELLQMGVPMFYPSKSLLKRWDESYGMMFQRTSGPGRRRAGGFSNVAYGKGSAPDPNDSVNQDALHYWLEKAEWYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRAQMDKIRDERWAEIRRDLTKTNSSGV*
Ga0105545_1065308	Ga0105545_10653082	F085818	FPVEIERGPFDNKYTPELLKHHIETGVLGLLRIKHNGRIIAGYVIRINVYPTAKRLLEILFIFGRNLNLRVGKQIFKKLEDLARQLKLDGIELTGRMQWNKVCDKLGFSDQQYIQRTKWLTY*