3300007744: Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina 'control', st9ic 200bp-25jan2016

Overview

Basic Information

• IMG/M Taxon OID: 3300007744
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117787 | Gp0124815 | Ga0105548
• Sample Name: Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina 'control', st9ic 200bp-25jan2016
• Sequencing Status: Finished
• Sequencing Center: University of New South Wales
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 75624207
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
• Type: Host-Associated
• Taxonomy: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Stylissa Sp. (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Upa-Upasina 'control' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.828217
  • Long. (^o): 150.820517
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007683	Metagenome / Metatranscriptome	346	Y
F037415	Metagenome / Metatranscriptome	168	N
F041044	Metagenome / Metatranscriptome	160	Y
F043451	Metagenome	156	N
F083784	Metagenome	112	Y
F092220	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105548_1007585	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1112
Ga0105548_1009562	Not Available	995
Ga0105548_1012630	Not Available	877
Ga0105548_1018994	Not Available	735
Ga0105548_1034954	Not Available	553
Ga0105548_1036626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	541

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105548_1007585	Ga0105548_10075853	F092220	MEPVKAIEPITEKDEIQKFQELKEQVFKEYADYSLNKLYNFNELLITTIHQLQFKQMAMQELITHRLDNICPKETTN*
Ga0105548_1009562	Ga0105548_10095621	F043451	MERLMPNIQPWLYPPHPSPDRVAYTPTRSAHILEYQEEMIDAEGNVYWKTVDSTTLGGATSVKEFLEQIKDFY
Ga0105548_1012630	Ga0105548_10126301	F041044	PKRIEMALPVPTKSLLKTSPDAAMLFAPFGCTHPPPPVTPFLLMQNLSLKDIAGSDIMKLKVS*
Ga0105548_1018994	Ga0105548_10189941	F083784	MDFNGTPFEVTMWAGTTVVTADIPIVDDEINEAEEEFVIVLEVVSNTTNPVKFTTNTTVCRIPASDRKCQLGPM*
Ga0105548_1034954	Ga0105548_10349541	F007683	MSLLAISLGLRFCVSRKDGTRGGGWVHPKGANSMATSGLVFRSDLVGTGR
Ga0105548_1036626	Ga0105548_10366261	F037415	MIMMEDDVLTQGKVKIPAEWECAGFDVPGNKISPGLLNFIKTKYGVTPNVDWYGAGGGSTYNIVTFLDNYHKIYDFIDFEFEYILKFLDHRFGWLDLYMQIAYFILGKDYSINNNLTEVWKTPNFRDTDF