3300007741: Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Dobu 'bubble', co12ds 200bp-25jan2016

Overview

Basic Information

• IMG/M Taxon OID: 3300007741
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117787 | Gp0124805 | Ga0105551
• Sample Name: Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Dobu 'bubble', co12ds 200bp-25jan2016
• Sequencing Status: Finished
• Sequencing Center: University of New South Wales
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 54745815
• Sequencing Scaffolds: 17
• Novel Protein Genes: 17
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	14
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium oryzae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
• Type: Host-Associated
• Taxonomy: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Coelcarteria Singaporensis (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Dobu 'bubble' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.73665
  • Long. (^o): 150.867667
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015987	Metagenome / Metatranscriptome	250	Y
F034580	Metagenome / Metatranscriptome	174	N
F053330	Metagenome	141	Y
F059062	Metagenome	134	Y
F080158	Metagenome / Metatranscriptome	115	Y
F085224	Metagenome	111	N
F101313	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105551_107798	Not Available	990
Ga0105551_110593	Not Available	835
Ga0105551_111509	Not Available	799
Ga0105551_116373	Not Available	667
Ga0105551_116375	Not Available	667
Ga0105551_119190	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	616
Ga0105551_120196	Not Available	601
Ga0105551_120823	Not Available	591
Ga0105551_122802	Not Available	563
Ga0105551_123117	Not Available	559
Ga0105551_124312	Not Available	543
Ga0105551_124627	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	540
Ga0105551_125645	Not Available	528
Ga0105551_126019	Not Available	523
Ga0105551_126366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium oryzae	520
Ga0105551_128235	Not Available	501
Ga0105551_128239	Not Available	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105551_107798	Ga0105551_1077981	F085224	FSYQDLLRFKAIVMFPYSIWSGVMLELLEMGVPVFYPSKILLKRWHERYEMVYQRSSGGHRSAGGFSNIAYGADSAPDPNDSVNREALHYWLEKAEFYNWDVRYFDSPADLHEQLKQADFEALHRDVLKTRARMDKIRDARWAEIKRDLTKTG*
Ga0105551_110593	Ga0105551_1105931	F015987	VEQITQTKLEKLNVLQLYQHYGALERSFPLLTPESQDLARAELEACSKLRSEKVDRIYYALAHHEDSAERAKKENVKLQEAQKHHESQVRQLKELVKNLRRSLPLDTNKINGRN
Ga0105551_111509	Ga0105551_1115092	F101313	MGSALKREFKVGDAVCHTNKFSTGNNFRKRRQGVVLALEKRPVKGGKLRSYVKVLWNTSSGPCYHASHALLLLKERKDAIEEASKLIST*
Ga0105551_116373	Ga0105551_1163732	F085224	YRRLITRTLNGFSYQDLLRFKAIVMFPYSIWSGVMLELLEMGVPMFYPSKSLLRRWDEKYGIMFHRPDFGRPRSAGGFSNIAYGKGAMPDPNDGVNREALHYWLEKAEFYNWDVRYFDSPADLHEQLKQADFEAMHRDVLKTRARMDKIRDERWAEIKRDLTKTSSTPA*
Ga0105551_116375	Ga0105551_1163751	F059062	LEGAIMSREVFDDNTILEGFKNLRDIIDAQKELNHLFDKRLKLLEASQFRQKPLVLTKEMEVKN*
Ga0105551_119190	Ga0105551_1191902	F053330	MAGTSIYSVYRRTARAAAKQQVVKKTSSVDVDKARSDFAYFCDVV
Ga0105551_120196	Ga0105551_1201961	F034580	MFALKNKELTASGQVTTKVSAGTNTLSAPARVLQLSIRCGATLGKVDLIDDGPSGTVRYTVPTPAIGAGEDEVMTISFPDFGIRFQTDLYVFF
Ga0105551_120823	Ga0105551_1208231	F085224	ELIEMGVPMFYPSKRLLKRWDERYGMMFHRTNAFGERRAGGFSNVAYGKGSMPDPNDSVNREALHYWLEKAEFYNWDVRYFDSPADLHEQLKAADFEALHRDVLKTRARMDKIRNERWAEIKRDLTKTA*
Ga0105551_122802	Ga0105551_1228022	F085224	HRTHEFGSGRNAGGFSNIAYGADSAPDPNDSVNPDALHYWLDKSEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIKRDLTKTSSTPA*
Ga0105551_123117	Ga0105551_1231171	F085224	ELIEMGVPMFYPSKRLLKRWDERYGMMFHRTNAFGERRAGGFSNVAYGKGSMPDPNDSVNREALHYWLEKAEFYNWDVRYFDSPADLHEQLKQADFEAMHRDVLKTRARMDKIRDERWAEIKRDLTKTSSTPA*
Ga0105551_124312	Ga0105551_1243122	F085224	HRTHEFGSGRNAGGFSNIAYGADSAPDPNDSVNPEALHYWLDKSEFYNWDVRYFDSPADLHEQLKQADFEAMHRDVLKTRARMDKIRNERWAEIRRDLTKSNSTPA*
Ga0105551_124627	Ga0105551_1246272	F080158	MATYKSDAGAILQPGNQINGLSSFNHEGVFGWPGIEAFEQIGYVKVTNVAADKASFKSFNITVPSPDRRVSDRVRDDRTSLVVKASTDRPAYVYGASIAIAQDTPSGGL
Ga0105551_125645	Ga0105551_1256451	F085224	RFKAIVMFPYSVFSGMMLELLEMGVPMFYPSKILLKRWDEQYGIMTQRTSAEGKRNAGGFSNVAYGKDLMPDPNDSVNPEALHYWLEKAEWYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIRRDLTKTNSSGV*
Ga0105551_126019	Ga0105551_1260192	F085224	PYSAFSGIMLELLEMGVPMFYPSKSLLKRWDESYGMMFQRTSGYGRRSAGGFSNIAYGKDLMPDPNDSVNREALHYWLEKSEWYNWDVRYFDSPADLHEKLKAADFEAMHRDVLKTRARTDKIRDERWAEIKRDLTKTA*
Ga0105551_126366	Ga0105551_1263661	F085224	LRFKAIVMFPYSAFSGIMLELLEMGVPMFYPSKRLLKRWDESYGMMFQRTSGYGRRSAGGFSNVAYGKDLMPDPNDSVNREALHYWLDKSEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIRRDLTKTSSTPA*
Ga0105551_128235	Ga0105551_1282351	F085224	VMFPYSIWSGVMLELLEMGVPMFYPSKILLKRWHERYEMVYQRSSGGRRSAGGFSNIAYGKDSAPDPNDSVNREALHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIKRDLTKISSTPA*
Ga0105551_128239	Ga0105551_1282391	F085224	VMFPYSIWSGVMLELLEMGVPMFYPSKILLKRWDESYGMMFQLTSGGCRSAGGFSNIAYGADSAPDPNDGVNREASHYWLDKAEFYNWDVRYFDSPADLHEQLKQADFEAMHRDVLKTRARMDKIRDERWAEIRRDLTKISSTPA*