3300007730: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_RNA CLC_assembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007730
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111355 | Gp0128094 | Ga0105669
• Sample Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_RNA CLC_assembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9055717
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Axial Seamount, northeast Pacific Ocean
• Coordinates
  • Lat. (^o): 45.9372
  • Long. (^o): -130.082
  • Alt. (m): N/A
  • Depth (m): 1500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008173	Metatranscriptome	337	Y
F021318	Metagenome / Metatranscriptome	219	Y
F098669	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105669_106255	Not Available	515
Ga0105669_109568	Not Available	984
Ga0105669_112545	Not Available	581

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105669_106255	Ga0105669_1062551	F098669	METATRSRKQKWRLKEAEGLGRKRRVEEAERRELHESDQGLDPGHGLNPGRKVRRIDQAMEGSPEIVPAKI
Ga0105669_109568	Ga0105669_1095681	F021318	MQAKINKREIDYKGQQLWLNPVDKTVYATDGAPTYSFGEVNGTPIYNYNTHFDAVKTAKSDKLGTSYFHDAFVDPEFKSLAEDYVSAVKSGGRQRQAALRSSVNSAVDIVNVWETVLGKRDRVYAGKNLAKEVAVPNLLISIDTVTKFTGLEKLDEGMRARVKELPYTRSTFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVIDVVETNTAQAAIAAWDTFVSSTTQSTGDPTIDIGIASLNIEGSGVGGRLNR
Ga0105669_112545	Ga0105669_1125451	F008173	NEVENVVAEISERYGRFQDIECRQLKDTLVGIEDSGPGGAGRVRVSDFYKLAVDHGKWQFSESLDYLRNMGALDESDASKPSVIIPNYISGPSNCVASSGFYSVCCLDECEGILSRLEQFIAAPEASATQIAAFISNIPSATMPSNRKLSPWLHQRLDELDEHHKGRIPLHGRLFGQWMHYAYPRECAFPHIS