3300007729: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDBack_2015_RNA CLC_assembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007729
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111355 | Gp0128092 | Ga0105666
• Sample Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDBack_2015_RNA CLC_assembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6797101
• Sequencing Scaffolds: 7
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Northeast Pacific Ocean
• Coordinates
  • Lat. (^o): 45.9372
  • Long. (^o): -130.082
  • Alt. (m): N/A
  • Depth (m): 1500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000049	Metagenome / Metatranscriptome	3277	Y
F000086	Metagenome / Metatranscriptome	2462	Y
F022589	Metagenome / Metatranscriptome	213	Y
F030135	Metagenome / Metatranscriptome	186	Y
F031929	Metagenome / Metatranscriptome	181	Y
F058702	Metatranscriptome	134	N
F074005	Metagenome / Metatranscriptome	120	N
F096644	Metagenome / Metatranscriptome	104	N
F098669	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105666_101604	Not Available	689
Ga0105666_104695	Not Available	552
Ga0105666_105180	Not Available	1075
Ga0105666_105581	Not Available	504
Ga0105666_107676	Not Available	903
Ga0105666_108875	Not Available	574
Ga0105666_111040	Not Available	529

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105666_101604	Ga0105666_1016041	F098669	METATRSRKQKWRLKEAEGLGRKRRVEEAERRELHESDQGLDPGHGLNPGRKVRRIDQAMEGS
Ga0105666_104695	Ga0105666_1046951	F030135	EELATLSSFTNIWHSTFAGCQFPDAILPGKEAIDLVAGPLN*
Ga0105666_105180	Ga0105666_1051801	F058702	ELDKCVPKQQAPTQPIDVMCPGTCPIECENGQELCDGTIDYSGGIHQHCIGQPGCRIKALDTNGLYCEENSDSHGCPVTCPPEEILCPAKLGPLACKEEKKCHQRTWTSEGDYCAETADCPTICPPNHVNCPGGIEENTCKAADLCIKEHRDFNDDVCPVHCPENCKDDEVFCPGTKSPINGCFSRDTCEKKDDHKWGPTEGAECPGWCPVICLDHEVLCPSYIDPCNGCPTEEICREAIKNTNGKFCPGKEFTLKEEQEDYRTNLNRRGGFLSASHNCPVYCKEWNGEVQCPVYEDPLGCKPEALCKERQIKSKNVDGSVNEYCPATSVCPRQCPSNQKLCHYEENDEDGCHHEDVC
Ga0105666_105581	Ga0105666_1055811	F074005	MVQVKTIDELEALYYGYNRNLLRKADAPITTSTVGVFNAIYGAYAWAQLNLEANAFGILPKYPWDKS
Ga0105666_105989	Ga0105666_1059891	F000049	LCKDLERAEVKKWLQQILEILMAERGKEERGEQSNKLEGLITKHEELIPTVLKTQVKVDLYWKCYAYGDELKPHIEFLDGIMLSSTRDIAPSCVENVDELIERQEKSLSQLETKRAVVKELIAKGKQLLENPDKPKFLDSHVSRIEVGWDDTKDKAQSRLTLLTNTKNAWVGYAEGLINIEDEFIKGDDEIKKIKKRFNLQAAFEDLEKRQKIFNGTKNTIEGMYNSIQSNYDVMTMTLPEDKKDFVKKEVKAVAEKLTVVEKFQEKVAKIENFV
Ga0105666_107676	Ga0105666_1076761	F096644	LTNMVSGKIASMTGQGEPVQEGVDPNLQQQMPQEEVNGGEYAQEGVEGGEQPPPPGGVSGFAQGLMMKAMTAKAGIQEKAGAMAPPNMGAMGGQLMAGVTNLIPGRKEEEVPNPPDQMVGAEGEVQYTEQGEQIQYTE*
Ga0105666_107983	Ga0105666_1079831	F000086	RLNEFDKSLKSIDAWMKEAETQLNDIKNNSDKMTPEDRVSYTMELQEDVAAKVEIIQANIAGELDLLPQGEKVPQDAQDYKDELKRIETFVLDLQKKVMKECDNFSEDVKYWAEYKTGIKSFRPWLESAEKKSTEGLTKPQTLDEANAMFAGVNDFDQACVKHLKIVNDAAAAANKMTTHKEADDEVAALKGRYDKVKAVADEWMKKSDTLVKEWKLLDNTVTELNSWVAKDRGAEGEQQFSLEKMESTLGELKNIFKEKEKLVENL*
Ga0105666_108875	Ga0105666_1088751	F022589	PKLCREESGEVLCPAYENADGCKPEAECVQRTEDDNKDWCPSGSVCKKECPKGFLLCEYEEVDSRGCKVEPTCVYKGKNINELYCPGTCPPLCSKDETLVSP*
Ga0105666_111040	Ga0105666_1110402	F031929	GISYESSFEYDLAAEDENGESSPSYWLRGVVTPDFAKGAYGIIGYNSDEEVTYGIGYNASDNFKVATELSGDGDTVIRASYSF*