3300007724: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763961826 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007724
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052838 | Ga0105680
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763961826 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 126660697
• Sequencing Scaffolds: 10
• Novel Protein Genes: 12
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F036281	Metagenome	170	N
F043990	Metagenome	155	N
F080164	Metagenome	115	N
F085820	Metagenome	111	N
F089055	Metagenome	109	Y
F092230	Metagenome	107	N
F097527	Metagenome	104	N
F103432	Metagenome	101	N
F103433	Metagenome	101	N
F103436	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105680_100163	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	49966
Ga0105680_100195	All Organisms → cellular organisms → Bacteria	45303
Ga0105680_100636	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	24099
Ga0105680_101067	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	17067
Ga0105680_101453	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	13734
Ga0105680_105362	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp.	4704
Ga0105680_106874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	3626
Ga0105680_115790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1376
Ga0105680_120436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1000
Ga0105680_125773	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	765

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105680_100163	Ga0105680_10016338	F089055	LKVEKMNSTPECVTKTPEIEAREKLAAIFSDAERCDNSKVNPELGKTAIDIENTSRMNSADDGAVYLCNQALGSYEKSLDHINNGPLETVQTIGISLQRLREYKTERSCR*
Ga0105680_100195	Ga0105680_10019520	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWSGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARAIAGLSPDDASKIPAYIKRASIFLAVLTAFLLALVVQKIRALFGGITASVFVVMLSFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELIHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPESYNFINKIVNLDNMANNGGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYILIGLWADYVVKRTVKYE*
Ga0105680_100636	Ga0105680_1006361	F080164	MVGLTLCAAPQVTLRERANAFPLITEKDESEIDAPYAWRLPVVPLSLDNREIRNFAKYPLLPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGFGVRTAPKLFGIKSMHVYGVQKDGSRQAVDKQVTLHLPGFEKAEKPILYKGQEGRLVLCEYYESHRGDLFLDVANAHPEIFGELRPVVDFHFSVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRP*
Ga0105680_100636	Ga0105680_1006362	F103432	MKLIHSLFSLPLLLVLGGFLCFTACQDDAEPARAAWLISTDSLIHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVEMEGKTLFRRHNLPSVSAYSLRVVAVGDTIYRQKESDAQFNADLDALFHESIGIAPRLFGVRELSVLGIDRKGKPRDLGNYSCPLLQGKRKNVNYRTREGVFHEHYEAASVDTFSVKSNWLLKTKAEPSLYAPSFRLLVWDQPAEGCTKLRFTLTLVDGRSLVAEVPLY*
Ga0105680_101067	Ga0105680_1010672	F032313	MYRFLILLFALTLMACDNDTPQEKPREQEKHEVPVPVPKPQFDEVGERIWYGRTPAMRLDSTDYGAGLISVFGMLTSKIPKQRFDSLFKQTVWEVKDIRVVETDLSLAKKNPGILGWVTTTEFTCRNGVILLHWQGIDVNHVDTVNYVYDEVDNEIVLEGTGIRWSVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEAK*
Ga0105680_101067	Ga0105680_1010673	F032313	MYRFLILIFALTLMACDNNTPQEKPHEQEKHEVPVPKPKPQFDEVGERIWYGRTPAMRLDSTDYGAGLIWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPRFVGGSIAKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKNAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEEK*
Ga0105680_101453	Ga0105680_10145313	F092230	MRQAHKRTVDKLKAYLLKVFFPLFIVCIILVAFFRQIGCGSEGEYAFQISEWGAKLKNIYGTDFINKEIIVRDNIVRVDGIRCLYAVNQNEDGLSIYLLLPEGTYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEVQSTEEKEARDKVDDAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTIGYFSYLKPETVYGFYCKLRRKEKYPSDVNLVKRIGLLVIILPPCMLFLLIV*
Ga0105680_105362	Ga0105680_1053621	F085820	MRSTFYLFAMLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVANECHFHRTWLTQGVKAIRVVRTHADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPAGLKQRIVLRLADGTEIEKELSDKRKK*
Ga0105680_106874	Ga0105680_1068743	F103436	MIITSKDGWCDKSDAEILNSLRDWVLKCDLKYSKREALKKIDSAFALWGNAEYVAAVHLLDENEVYFSKEDWPYYALGIEILKARKYTYFY*
Ga0105680_115790	Ga0105680_1157903	F097527	MIYFKMEKIGNSTHNKEKKTRSENLVFNTIPAAGVEPARPCGHWILSSMNTF
Ga0105680_120436	Ga0105680_1204362	F043990	MIKKLGIIFTFGVIILGIAVYANHKIESSAIEREFGVNMSNMNIDEKYRKEEWALNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNTTNGYYKYVVDENDDRDFGILIVDTTRKEICIYYQIL*
Ga0105680_125773	Ga0105680_1257732	F036281	MITLIKVDEGPVDIHELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYSYKEYFDYWTAREGRPAPFFYESRQYHVKSFMRVPGMPELLITAEREKDHWYTFRLSDGLKS