Sample 3300007723

Basic Information
IMG/M Taxon OID	3300007723 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114514 \| Gp0125920 \| Ga0102928
Sample Name	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_B_D1_MG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_B_D1_MG

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	778391274
Sequencing Scaffolds	28
Novel Protein Genes	34
Associated Families	21

Dataset Contents

Total Genome Size

778391274

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	20
All Organisms → Viruses → Predicted Viral	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium

Ecosystem Assignment (GOLD)
Name	Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Ecosystem Assignment (GOLD)

Name

Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → wetland area → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

terrestrial biome → wetland area → soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	South San Francisco, USA
Coordinates	Lat. (^o)	37.4968	Long. (^o)	-122.1333	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Location Information

Location

South San Francisco, USA

Coordinates

Lat. (^o)

37.4968

Long. (^o)

-122.1333

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005874	Metagenome	387	Y
F007787	Metagenome	345	N
F012594	Metagenome / Metatranscriptome	279	Y
F032166	Metagenome	180	Y
F032663	Metagenome / Metatranscriptome	179	Y
F033769	Metagenome / Metatranscriptome	176	N
F038111	Metagenome	166	N
F046978	Metagenome	150	Y
F050310	Metagenome	145	Y
F054750	Metagenome	139	Y
F055545	Metagenome	138	Y
F056354	Metagenome	137	N
F063375	Metagenome	129	N
F073153	Metagenome	120	N
F075754	Metagenome	118	N
F086685	Metagenome	110	N
F097603	Metagenome / Metatranscriptome	104	Y
F097996	Metagenome	104	N
F099972	Metagenome	103	Y
F100427	Metagenome	102	N
F101126	Metagenome / Metatranscriptome	102	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0102928_1021275	Not Available	3165	Open in IMG/M
Ga0102928_1072043	Not Available	1595	Open in IMG/M
Ga0102928_1076717	All Organisms → Viruses → Predicted Viral	1538	Open in IMG/M
Ga0102928_1102297	All Organisms → Viruses → Predicted Viral	1311	Open in IMG/M
Ga0102928_1105302	Not Available	1290	Open in IMG/M
Ga0102928_1109946	All Organisms → Viruses → Predicted Viral	1258	Open in IMG/M
Ga0102928_1112991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1238	Open in IMG/M
Ga0102928_1119872	Not Available	1198	Open in IMG/M
Ga0102928_1149105	All Organisms → Viruses → Predicted Viral	1058	Open in IMG/M
Ga0102928_1158260	All Organisms → Viruses → Predicted Viral	1023	Open in IMG/M
Ga0102928_1185280	Not Available	934	Open in IMG/M
Ga0102928_1187714	Not Available	927	Open in IMG/M
Ga0102928_1210323	Not Available	869	Open in IMG/M
Ga0102928_1215232	Not Available	858	Open in IMG/M
Ga0102928_1254629	Not Available	779	Open in IMG/M
Ga0102928_1265422	Not Available	761	Open in IMG/M
Ga0102928_1316778	Not Available	687	Open in IMG/M
Ga0102928_1337725	Not Available	663	Open in IMG/M
Ga0102928_1349134	Not Available	650	Open in IMG/M
Ga0102928_1380045	Not Available	619	Open in IMG/M
Ga0102928_1406167	Not Available	596	Open in IMG/M
Ga0102928_1410194	Not Available	593	Open in IMG/M
Ga0102928_1420700	Not Available	584	Open in IMG/M
Ga0102928_1486030	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	538	Open in IMG/M
Ga0102928_1491200	Not Available	535	Open in IMG/M
Ga0102928_1507646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium	525	Open in IMG/M
Ga0102928_1510277	Not Available	524	Open in IMG/M
Ga0102928_1528565	Not Available	513	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102928_1021275	Ga0102928_10212753	F050310	MANMQSFIIGIVLVGVTLVIGIFISAEIADQMEVNSSEANAANDLVTALSGGSAWITILVVVGFATIVLSMLTSGLGGRSSDVGPVY*
Ga0102928_1072043	Ga0102928_10720432	F056354	MIVEVFIALSIIATLITGMAIRGDIPELLGAAVAAIMSIVAGINALDLFVITNSGNVKDIDPQTDIALILLVIFVINLIFIFDRAFSGGN*
Ga0102928_1076717	Ga0102928_10767173	F005874	MRMRARKATMAMIPNMPPDDDLTPAELYDRVEDITNLTVEELQAFKGSDYNEIYNARKSDAAQRKDEPLDDVIRLLSTEPAEWRDVDDGFNEVDEAEELLNFQRGTQAQIASQGLGENYLTEEEDMTMREAASIRWGIDPDEQREWL*
Ga0102928_1102297	Ga0102928_11022973	F097996	FQVDWPVFVKIPFTADGKQWKKSEHFNWAERNIDTKDAASLYAQGFIYHNTELAKTNKVGDRLGEMSKDDLYSLVVQLNNIVKKQTTTTKEFNNKKCKQSKIEDKQRGLIRRFLNHNPWITEEYYEIRDHILGD*
Ga0102928_1105302	Ga0102928_11053025	F073153	DLPVRDEIRRIDGNIEGILTRLGNQSETIARIDLLVEEMQEMQTELEHIEVRLNTLESRIG*
Ga0102928_1109946	Ga0102928_11099463	F097996	FQVDWPVFVKIPFTADGKQWKKSEHFNWAERNIDTKDAASLYAQGFIYHNTELNKANKVGDRLSEMNAEDLRTVVTQLNAIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWITEDFYTIRDTILGE*
Ga0102928_1112991	Ga0102928_11129913	F033769	MSVNCGIKTATNTPATVGVATGRKYLRLTNESLDMRCRAGDDGISNTAGIIIEPGETVEFRPLPSDNTDIYVMSEGKATKLAY*
Ga0102928_1119872	Ga0102928_11198723	F101126	LDGYDNEEEMIEACEEFIYENLNFFASSVEITYLSDEDEKI*
Ga0102928_1149105	Ga0102928_11491052	F038111	MIHRVPVVNRDNYTIWLENYKNIANFIHAEVYKYNKTTREEFGKDLDKLMDLHQNPLYVLVETDNKKLKKFMNIYGLTLDHKPLCDDGIEREVYRLDRRV*
Ga0102928_1158260	Ga0102928_11582604	F054750	MKEIDKLNDYVNRYYNCDRTNGADLLYLQQKITGLLYYLETVRSEIHDAFESKVFELVQEGNSVARAVNEAHVSYPQMYQLRRIMDAGYRIVDAIRTNISYLKSEMNTINK*
Ga0102928_1172985	Ga0102928_11729853	F046978	MTEETKQKAVDLSVLVLGTENISGYISYLINKAHLEAQK*
Ga0102928_1185280	Ga0102928_11852801	F075754	MTSYQAGIEWHTPMNPWEPIHARVDDTSEWYAAQVGRSEYLRDSEEDADMHHRKGGVVAEGLVKAIFAGMEWWDTHSFDTFLGGTRYDIISRGLNRGEPRQHYVHKIQAKKEERAKPSTHYYAVVRNHPDYWLIGHINSVRFWYLCDRSAPEFWDDEQFDGGFLSYEHFEQLPVAEAISPPPGIEVFGQG*
Ga0102928_1187714	Ga0102928_11877143	F005874	MLSPEELYDRVEDTVNLSIDELFAFKRSEYNEEYNARKSDAAQAKDEPLDDVIRLVSTPPEAWKDEDDGFNEVQEAEELLDFQRRTQAQIASQGLGMNFLGDDQDMTMREAASIRWGIDPDDEREWL*
Ga0102928_1189432	Ga0102928_11894322	F100427	VTEVPLLVWIPFWALIATIGHELTHYVFWVPIATDIEWDVWGNELEIEHIATPWAMRWAIVASMAPLLVGTVVLMYWLSTQPAVTTHSAIMGIGLAVYTFAGGKADYGRLTDAVTTRLA*
Ga0102928_1210323	Ga0102928_12103233	F099972	MPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMMQALEALSAEAKKDIERKLNENN*
Ga0102928_1215232	Ga0102928_12152321	F086685	MIELTTIPLVVWVIGCIAFVILGHELTHYIAWLPVATSIEYHFEDQYIEAEYPDTPFARKWAVVAGISPVIVATGLVLALIATGWNPTATWHHITASAAVVLYGISGGKSDFVALFSLVQRLRSPAAE*
Ga0102928_1254629	Ga0102928_12546291	F005874	MLSPEELYDRVEDTVNLSVDDLFAFKRSEYNEEYNARKSDAAQAKDEPLDDVIRLLSTPPEAWKDEDDGFNEVQEAEELLDFQRRTQAQIASQGLGINFLGEEQDMTMREAASIRWGIDPDNEREWL*
Ga0102928_1254931	Ga0102928_12549311	F012594	AGTYDYKRYVYLQTGTEGALAYAGASDVSASNGILLSETNNAVFELKPDDTLYAITDTASAVVKVLEVK*
Ga0102928_1265422	Ga0102928_12654221	F032166	AQQGNEPLDDVIRLLETPPDQWRDVYDGFNEIAEARELLDFQRRTQAQIESQGLGSNTVAEYDDMTFREAASIRWGIDPDNEREWL*
Ga0102928_1316778	Ga0102928_13167783	F032166	AQRGNEPLDDVITLLETPPEQWRDVEDGFNEIAEAREMLDFQRRTQAQIKSQGLGSNTLPEYDDMTFREAASIRWGIDPDDEREWL*
Ga0102928_1337725	Ga0102928_13377251	F007787	FIIIFVKTKTMGKTKELAVMLNAESFEEMQFAQDFTKKEAKAKGQELAKTILDNGNANPLEVMATLSRLTEVINTFSETLKKDLNIPENETTLNGVHFKTRQGYPIYDYKKDGMINHYETLLKQPKDLIKQASKTGKPAVDPNNGEEIEGVPIKGYTKDSIVITF*
Ga0102928_1349134	Ga0102928_13491343	F073153	MSEQDLPVRDEIRRIDGNIEGILTRLGNQSETIARIDLLVEEMQQMQTEIEHIEVRLNTLESRLR*
Ga0102928_1380045	Ga0102928_13800451	F097996	RYLGWQVDWPIFVKVPFTADGKYWKKSEHFNWAERNLEMKDVASLYAQGFVYHNTELNKANKVGDRLSEMNAEDLRSVVTQLNAIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWIAEDFYEIRDTILGD*
Ga0102928_1406167	Ga0102928_14061673	F086685	MIDITTIPLVLWVLGCITFVIRGHGLTHYIAWLPVASSIEYHFEEQYIEAEYPDTPFARKWAVVAGISPVIVATGLVLALMLSGWEWLADLHHTTASVAVLLYGISGGKSDFDALFNLVRTLRSRAASD*
Ga0102928_1410194	Ga0102928_14101941	F063375	MTAVDISPRQLAFIETVGGHLQTVIAYGGVFMGGVIIGFESSDYPMMWPITQSYTGKAVTYPYTQMLEIGIGILAVCVMMTILLEWVVYLHER*
Ga0102928_1410327	Ga0102928_14103272	F100427	MTDVPLLLWIPLWALIATIGHELTHYVFWLPIATEIDWDVWGNELEIEHTAGPWSMRWAIVASMAPLLVGTVVLMYWLSTQPAVTAHGAIMAIGMAVYTFAGGRADYSRLTAAVTARLA*
Ga0102928_1420700	Ga0102928_14207001	F056354	MIVELFIVLSIIATLITGMAIRGDIPELLGAFVAAVMSIVAAINALDLIVITNSGTTKNLDPQVDIALILLLIFIVNIIF
Ga0102928_1486030	Ga0102928_14860302	F032663	VSVPYQRVSNATVKDIIFYDPAAERRASQMQVDWDDYFKVGSQEILYQLEFGWWPKYCDTTFGASYYTNLPNGELISSFDPNLLIKSDQTLIRLDTFMAVKIFYETVVSDTSNVN
Ga0102928_1491200	Ga0102928_14912001	F032166	DAIQLLDTPADEWRDLDDGFNEVDEAEELLDFQRRTQGQIEAQGLGENYLTDERDVTKREAASIRWAIDPDEEREWL*
Ga0102928_1496135	Ga0102928_14961351	F100427	TIGHELTHYIFWVPIATDIEWDVWGNELEIEHIATPWAMRWAIVASMAPLLIGTVVLMYWLSTQPDVTKHSAIMGIGLAIYTFAGGKADYGRLTDAVTTRLA*
Ga0102928_1507646	Ga0102928_15076461	F055545	LLKLRTVGGAKVKADVIASHAPNIAHRAANGNLVSGGEH*
Ga0102928_1510277	Ga0102928_15102771	F005874	MLSPEELYNRVEETVNLSVDDLFAFKRSEYNEEYNARKSDQAQAKDEPLDDVIRLLSTPPEAWKDEDDGFNEVQEAEELLDFQRRTQAQIASQGLGMNFLGDDRDMTMREAASIRWGIDPDDDREWL*
Ga0102928_1528565	Ga0102928_15285651	F063375	MTAVDIFPRQLALIETVGGHLQTVIAYGGVFMGGVIIGFESSDYPMMWSITQSDTGKGVTYPYTPILKLGMSIRAVS
Ga0102928_1537244	Ga0102928_15372441	F097603	MVKNQRLDAMTLNIHKMWIVNPLANIDKKELVTRPFGIIYSTDPNGVKEVQFSDVKASAYREEELLKGDMRYASGVDDFSMGVGGGAGSATEVRHLRESTLERVRLFVNHLGDGFSKMQRYWMSMWRQFYTKEMVIRITGDDGKLEFPLIEKDDLMGEFDFKSAVLPSI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007723: Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_B_D1_MG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences