3300007713: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764325968 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007713
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052803 | Ga0105659
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764325968 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 102256971
• Sequencing Scaffolds: 16
• Novel Protein Genes: 19
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F041827	Metagenome	159	Y
F051214	Metagenome	144	N
F054109	Metagenome	140	N
F057446	Metagenome	136	N
F059076	Metagenome	134	N
F061927	Metagenome	131	N
F074985	Metagenome	119	N
F084362	Metagenome	112	N
F085821	Metagenome	111	N
F089056	Metagenome	109	N
F092231	Metagenome	107	Y
F095630	Metagenome	105	N
F095632	Metagenome	105	N
F101358	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105659_1000026	Not Available	44318
Ga0105659_1000363	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	16494
Ga0105659_1000483	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	14528
Ga0105659_1000701	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	12111
Ga0105659_1000789	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	11441
Ga0105659_1001248	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	8845
Ga0105659_1001610	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7589
Ga0105659_1001924	All Organisms → cellular organisms → Bacteria	6802
Ga0105659_1003088	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4939
Ga0105659_1007818	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	2292
Ga0105659_1010565	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1767
Ga0105659_1010902	Not Available	1719
Ga0105659_1012099	All Organisms → Viruses → Predicted Viral	1581
Ga0105659_1022896	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	911
Ga0105659_1024599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica	857
Ga0105659_1025591	Not Available	828

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105659_1000026	Ga0105659_100002625	F054109	MIKEKINMTGRPKSKKGVKVHTAFKIYPKDKERAQIMADKLDLSLSAYINKAVLEKLAHDEKSEA*
Ga0105659_1000363	Ga0105659_100036311	F059076	MTNRILLLGLLLGGVSINAQNINEINAAGKTKQKVGINTTIPTRTLTIKNAAADKGKPVLRLVDSPVYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTISNVEGDWIDKFDTGIDYTKYAVAIMSATFKMPKPASGGLVMLRGGNNVPSVDFGGGKYGVTTAPATVLLTQNGSNWGIYADYPNIGVYELSSGSTTLGQPVNGTWVITLLVGKRDAVNFTELEFPQRGRNNGIGTSNPTYRAGLESFLQKLE*
Ga0105659_1000483	Ga0105659_100048311	F095632	MSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGIGSSVLGTYVGDKAGRQYAETLADTIDSLQTPQTN*
Ga0105659_1000701	Ga0105659_100070114	F041827	MKHFLSALALGCLLLSCNRDLENNENNETPAPPKEERLVLASLYEFGSNVRFQYKNGNEINRMAMDGPHGEASMDFEYDTYGRIVKERRFHHRSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNPKNTLRNMKGFPALVVEFYIRPFTYELPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYDKRKSHDNDYLEIEEVNIYEKSHNDPTHDNYLSSASPARFYTKEK*
Ga0105659_1000701	Ga0105659_100070115	F041827	MKHFLSILALGCLLLSCNRDLENNETPAPQKEKLVLLKQLSEGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDRGETNITYQYDNQGRLVSSHAISTKFYPGTGLTPRCSVEKKHTYTYQGNKVIVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIEQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNLGIQRIEDLRYIDNIKTRDFHDDDYMLYKYDDDKGNSYDGDYPTKIFVF
Ga0105659_1000789	Ga0105659_10007892	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKLLYLSASLVFIGLYLFDLYQNDFDFAKVSHFKTISAVLWLVIFVLQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGGKKRKIEGFSQDEAEQIIKFLMNNR*
Ga0105659_1001248	Ga0105659_100124813	F061927	LNFKKKQNKPLIISFKNILLNLFLNYIIMKNSIFILSAMFILGACSSDSAQKVTEKIKNAYSDGLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIDSCIGE*
Ga0105659_1001610	Ga0105659_10016108	F074985	MELTDGGWYKTPRIIKGTDFLAHIHDTYASGNAIYVEFKASEGEVRILEYQRLYEVDTESAVLFTINTYPPESILLKRFNLEQFDQLWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEVRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDHIKAMYID*
Ga0105659_1001610	Ga0105659_10016109	F036281	MITLIKVDEGPVDIYELRMQYLAKLKKTDGVMLPKFIYRNRELFITEFKPTCDDQWIMYLTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPTPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRVSDDLKSKFTRHAITNEKGHQTYDWVLKNVEWAADTIRYF*
Ga0105659_1001924	Ga0105659_10019246	F095630	MHYSSLYKISKDNGLLAHVYEHLLAQYILKYLQDRGFFISSDIILTAKTYGDTCYMDVDLHNPAAPNIYNEALRAFDKYTIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQSEMTYRKSYDKSSVDTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIVMQAVALNFLVAVRENYTVYDRGDQWSEASLSVGYRMFLGLAKEDKQITSQLKHEFTAYIQYLLKSPFCSNLQKALLRCSRNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI*
Ga0105659_1003088	Ga0105659_10030884	F089056	MIFYRIVNLINSKFNPLIIKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ*
Ga0105659_1007818	Ga0105659_10078182	F085821	MDHIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFIAGNMPAVQLCIDYLVAQGYPTAENKKQFLNWIFMEPVYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEASVNKTLSIIRSGETIASGKEDVVELAESLNDEYELNISLLDEYCRALLYTAETTESQQELVAETQSHIALLKDLYKKVNKIK*
Ga0105659_1010565	Ga0105659_10105653	F101358	MTEKYSASPAAKEETSASLPPRQPEHLLTQPITTDGTPQERATHPDTYSIPKRQDVPRHLWNVLRSSGQLDEGWIDTEIITEDGVTLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVTMKNGRLQPVADATHATHQNDSTDEQETEVLPAQDEKYDRTGTDGEGNRQSVAGLAKAARLDTVVDNSLLVERVLGRVE*
Ga0105659_1010902	Ga0105659_10109025	F084362	MSLMNCAFTVRWSDEKNKPHAKTYATEADAKRAKKWLLEDGVRSVDIAVKINNKPAGSLKDDKPSETEAEQKGFWWEK*
Ga0105659_1012099	Ga0105659_10120991	F027205	MRAVKDSEEFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRI
Ga0105659_1012099	Ga0105659_10120994	F051214	ELKDCFEAFRRGVEYREKNDVDDILVICNTTDLIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPVYIYNNREYQIACEFLRQIMHDKIDLKDEWLV*
Ga0105659_1022896	Ga0105659_10228963	F018385	DDPIIYGVNVKHFTVTVYSPEGRVSKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEVK*
Ga0105659_1024599	Ga0105659_10245992	F092231	MIIFPPQEFITWTNKLMQFPWPIQVGDFAPYAEKLGWAPTSLPDEFSVCAGNNGGRVILGDDRSGNVRDLFLSMARNETEDAEGAAELNDHFVSCVAAGREAWGEPFLLEAGDGPGVTWRFPGDMFAQVTSGSRAVLFNFFTREGRRQFL*
Ga0105659_1025591	Ga0105659_10255912	F054109	MVGRPKSKKGVKVHTAFKIYPEDKERVQAMADKLDMSLSSYINKAVLEKVDRDEKSED*