3300007654: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765094712 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007654
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052751 | Ga0105017
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765094712 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 147882798
• Sequencing Scaffolds: 23
• Novel Protein Genes: 26
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F042387	Metagenome	158	N
F043990	Metagenome	155	N
F049707	Metagenome	146	N
F054109	Metagenome	140	N
F054111	Metagenome	140	N
F061927	Metagenome	131	N
F063777	Metagenome	129	N
F063778	Metagenome	129	Y
F064818	Metagenome	128	N
F080165	Metagenome	115	N
F085821	Metagenome	111	N
F089056	Metagenome	109	N
F092231	Metagenome	107	Y
F095631	Metagenome	105	N
F095632	Metagenome	105	N
F097490	Metagenome	104	N
F101358	Metagenome	102	Y
F101359	Metagenome	102	N
F101360	Metagenome	102	N
F103431	Metagenome	101	N
F103434	Metagenome	101	N
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105017_100007	Not Available	244669
Ga0105017_100008	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	240161
Ga0105017_100013	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	220348
Ga0105017_100268	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43889
Ga0105017_100269	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43820
Ga0105017_100270	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43796
Ga0105017_100546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	27468
Ga0105017_102167	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	9510
Ga0105017_102277	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	9164
Ga0105017_102421	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	8717
Ga0105017_104731	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	4828
Ga0105017_104740	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	4823
Ga0105017_105098	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	4510
Ga0105017_105487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica	4223
Ga0105017_105566	All Organisms → cellular organisms → Bacteria	4164
Ga0105017_106001	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3872
Ga0105017_106187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	3765
Ga0105017_108233	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2861
Ga0105017_110402	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	2303
Ga0105017_110413	All Organisms → cellular organisms → Bacteria	2301
Ga0105017_126660	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	955
Ga0105017_141138	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	640
Ga0105017_150628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	512

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105017_100007	Ga0105017_10000739	F054109	MIKEKINMTGRPRSKKGVKVHTAFKIYPKDKERAQAMAEKLDISLSSYINKAVLEKLAHDEKSEA*
Ga0105017_100008	Ga0105017_100008117	F095631	MASDAVSANTVARSYSDTVINTVKNDTMLNANIYDINQYIENIKKKYISEDDLTLSMGIFGYLGDVNSNALQNAVSMAAEYSNEAIPIKAKFEKNVISHALSLGINKIYAEPSTMNAMLIFYENELILNTVNDTFRLDREVKIMVGDYEFHIPYDLIIKRILLPTGDYVYTGMYDTTQVNPIITRNSKDVDPYLKPTIKSQIDGQPVIMCLVELRQYEFSTIHKTIVTSNPLESKMMQFEFDNQLAGFDVDVKEYGNPVRKLKPVYNGLNTDGVNDFCNYTFIDSSTIRIMFDNASYLPTANTEVTVNLYTSQGSKGNIKYKDTVYFRVNSTNINYDRLNLLVVPTGEAQYGLDKKSISDLKKLIPKEALARGSVTNSTDINNYFNTIADEDNKIFFFKKMDNPLSRLYYAFLLMNTTTNIIPTNTIPVECIRRDFDNISDSNYILTAGNSIKYDGKTNASVVYNASKDELKKISNESFLYMNPFMCIINKKPLYVSYYLNIMDVSKILEFTYVNQDSKVQFITNNMNWKRSYLTKRDTYVCDISILQNIQSNIGIIHRDDPYDPNKITGADLKVIAVFYSDDKYQVPYRWAEAKFVNYDESSYSFDYRFELNTDNKIDKNVRLKVNDVHEMKAAADKFEPGYMLNNMPMKIFVYCKNVFEYDAGRNKTEQYFADGFLNGYSLTNEYTVKYGIDFLYNYSDLIESVIKIKKQDNGQISYYIDRVPVIGYDYVNTEDKIQNFINELEKKRIHILDCLDVLEDSFGIDIKFFNTYGPSKIFYIENSVPINRVNLSLKFKIKLLTASDKYIIDYIKNDIRKYIEDKSKITDVHIPNIITYITQKYADSITYFEFLDFNGYGPGYQHIYRKDESIVGKIPEFLNINSTNTEDNKLDINIIIA*
Ga0105017_100013	Ga0105017_10001393	F105378	MNINVYVNNIKKWVQISSDEVLDRNKNLSDLKDKNAAIINLGLYDKFISKEALESGFLPDIFTPENIVTDSNHQFVTDTEKNKWNNKLNKPIANQDHLEENQIGYDELNEKFYIGLNNKNVLIGGASELDNVKVVNGFFSGNSQATVIRNTKQNQNGEFIRPMFVDVQCTEYTGGDLGEISVTYTAEAINVYNTGSFTGSFQCMIVYPLGSANR*
Ga0105017_100268	Ga0105017_1002683	F103434	VVGFRPRRGRYLENGPHVVEVTLAVVKEGRTGRRFERGETFTIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR*
Ga0105017_100268	Ga0105017_10026831	F101360	VSKENALRKAAIAAHITKVASQEKKKALKELEEYMAPGDTSKPMIDGMQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVATAALDGFIKQTGEVPDGVEVVQGDPRISVRISTVQEEAIRELISTGDISLIEIEGGDA*
Ga0105017_100269	Ga0105017_10026912	F095632	MSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSIKTPQTN*
Ga0105017_100269	Ga0105017_10026948	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTVWYFRLVDGGIMTFSAREWEQKDDVNHLTTIWMRPSLYDIERKEN*
Ga0105017_100270	Ga0105017_1002703	F103434	MVGFRPRRGRYLENGPHVVEVTLAVIKEGRTGRRFERGETFTIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTEAK*
Ga0105017_100270	Ga0105017_10027034	F101360	VSKKSAARRAAIAAHIAKVASQEKKNALKELEEYMEPGDTTKPQVDGLQVGTVSVSAPQPRYQVVDEKALVTWLEWNKPDAVHKVPAPWFVSAAALDGFIKQTGEVPDGVEVVQGDPRISVRISAAQEESIRELISTGDISLLEIEGGDV*
Ga0105017_100546	Ga0105017_10054615	F063778	MPETISEGAQQQLLRQLQDALGLVADADTSAQDVAAITHSAADGHQLTEVMLQQMTAIEAYLKNCQTSINDAMGNIEAIPLDPPPED*
Ga0105017_102167	Ga0105017_10216713	F061927	MKKSIFILSVMFILGACSSDSAQKATEKIKNTYSEGLRKTFIKEGIKSCIENSGLKESEAREYCKCAMNKLNESLSNDEIVDISMDNSPKDLDDRIEKAISSCIGE*
Ga0105017_102277	Ga0105017_1022772	F080165	MKNKKFLLAILLSLTACNNKTKTISTLDLEKVVINYKDLPAPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEKDSLQYTFTRYILR*
Ga0105017_102421	Ga0105017_1024215	F101358	MTEKYSASHGAENQASPPLPRQPEHLLTQPITTDGTPKERATHPDTHSIPKRQDVPRHQWNVLRSSGQLDEGWIDTEIIDKGGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGMMIKDGRLQPVADTTHATTSSQEQQTEVLPAQSDNTYDHLGGDSARQLVGSVAAKASDGEVDNSLLVERVLGRAE*
Ga0105017_104731	Ga0105017_1047317	F030786	MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSTTKGRNAMGTKKISLADITDGDKSKVVAIKVKYLDDDGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0105017_104740	Ga0105017_1047404	F085821	MDHIFEQLAPLAETKKQQTTVSKFIEKGFKFTRQPDAQKFTFLVYDFFIAGNMPAVQLCIDYLVAQGYPTAENKKQFLNWIFMEPVYYLKYFISDTSTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEANINKTLSIIRSGETIASRKEDVVELAESLNDEYELNISLLDEYCRALLCTAETTESQQELVAEIQSHIALLKDLYKKVNKIK*
Ga0105017_105098	Ga0105017_1050982	F043990	MIKKLGIIFTFGVIILGIVVYANHKIERSWIEGEFGVNMSNMNIDEKYREEEWVPNGDGEKTIILTYDQLDSSFTKSNKLPIKEDLPPNGIPKQFLNNTNGYYKYIGDENDDWNFGILIVDTTRKEIWNNNPNIIYLL*
Ga0105017_105487	Ga0105017_1054873	F092231	MIIFPPQEFITWTNRLIQFPWPIQLNDFPAYAEQLGWKPTSRPTWFNVLPDNDDEITMISSDREGNVHNLFLYMASNEAEDAEGAAELNDHFVSCVAAGREAWGEPFLLEAGGGPGVTWRFPGDMFTQVTSGRWSVLFNFFTPEGRRQFL*
Ga0105017_105566	Ga0105017_1055663	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKDVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0105017_106001	Ga0105017_1060014	F054111	MVFKNLEKASMDKPLDNITHEVFLKLMEHLKNLQEFTFLEYIIAPEADIFYFNFMKKTVKIKWGLDYGLSLETKALYTSDKDLFLNILHKEILSLENQ*
Ga0105017_106187	Ga0105017_1061874	F063778	MPETISEEAKQQLLRQLQDALGLVKNADTSAHDVAAITHSAADGHQLTEVMLQQVTAIEAYLKNCQVSINDAIGNIEAIPLDPPLED*
Ga0105017_108233	Ga0105017_1082333	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSAVNGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQRQSFTDSYKETVK*
Ga0105017_110402	Ga0105017_1104024	F097490	MNKKMNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPVVSIMTKYLQHIGGEMIEGQIHHKKIDNIVCSVYIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNLFSNSKENKKMYFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0105017_110413	Ga0105017_1104133	F063777	LKVLNIKISALPPENNSFWMKLLLYLCIPFLLIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHLDDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNRLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKTINGYNNKEQIEIIISE*
Ga0105017_126660	Ga0105017_1266602	F042387	IAENNKVISKRFEYQNDNELKEIIDEGSGERVVFVYEKDFITSKIRYSQSGEELGKTNYQYNNGKLSSVIDEAVISDSGIQYKKVITREYSYNSSEVSVNENVKYHSESYAYNLKDENFTHTYVLNGENIIKIHHEISKNVPSGHFYLNPNNMVVIDEEVTYDTKNSPYKNIKGFSVLAVEFCGLDKDENTIADYLNFRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVTTMVYEYNK*
Ga0105017_141138	Ga0105017_1411381	F089056	MNVFCKIILPLLCIISCSKRKEADNTKTLEKNHTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSVLLKEYLGTPNRRFKDKEEIVFMYYINSCCDNGQLLEECDVSFIAITFTNKNEILFRKGIQ*
Ga0105017_150628	Ga0105017_1506281	F103431	MIDLDALIVGMLFFIQLFLQSIAWRVAIAHFLHAERGNAAAAAFDGALRENIADCHAEDDNDKDAESQKEGFHVCIPEG*