3300007626: Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_C_D2_MG

Overview

Basic Information

• IMG/M Taxon OID: 3300007626
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114514 | Gp0125923 | Ga0102932
• Sample Name: Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_C_D2_MG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 575850556
• Sequencing Scaffolds: 20
• Novel Protein Genes: 25
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	16
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Spiribacter → Spiribacter salinus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → wetland area → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4971
  • Long. (^o): -122.133
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005874	Metagenome	387	Y
F014681	Metagenome / Metatranscriptome	261	Y
F015275	Metagenome / Metatranscriptome	256	Y
F029294	Metagenome	189	Y
F042291	Metagenome	158	Y
F050177	Metagenome	145	N
F050310	Metagenome	145	Y
F055545	Metagenome	138	Y
F056354	Metagenome	137	N
F073153	Metagenome	120	N
F075754	Metagenome	118	N
F086685	Metagenome	110	N
F097996	Metagenome	104	N
F100427	Metagenome	102	N
F100495	Metagenome	102	Y
F104555	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102932_1005661	Not Available	6040
Ga0102932_1027680	Not Available	2350
Ga0102932_1027859	Not Available	2341
Ga0102932_1042426	Not Available	1830
Ga0102932_1055453	Not Available	1564
Ga0102932_1060424	Not Available	1488
Ga0102932_1075450	All Organisms → Viruses → Predicted Viral	1306
Ga0102932_1086895	All Organisms → Viruses → Predicted Viral	1201
Ga0102932_1101512	Not Available	1097
Ga0102932_1111849	Not Available	1038
Ga0102932_1145880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Spiribacter → Spiribacter salinus	889
Ga0102932_1151173	Not Available	871
Ga0102932_1151804	Not Available	869
Ga0102932_1162601	Not Available	835
Ga0102932_1171291	Not Available	810
Ga0102932_1174995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	800
Ga0102932_1271235	Not Available	623
Ga0102932_1281033	Not Available	610
Ga0102932_1300772	Not Available	587
Ga0102932_1371750	Not Available	523

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102932_1005661	Ga0102932_10056615	F050310	MANMQSFIIGIVLVGVTLVIGIFISSEIADQMDTGSAEANAANDLVTALSGGSAWITILVVVGFATIVLSMLTSGLGGSSADVGPVY*
Ga0102932_1027680	Ga0102932_10276802	F029294	MTQETGETRDAIIEDDQKKLEAILAANKHRRDPYWVVIFAKPSKNSVDGKPTLVKHVKAYGVKPTPQVGMITGEVNNSTGEIKWEVNMPQRPFDFDALQQFGAKPCNEAVIETTSIPGAYITK*
Ga0102932_1027859	Ga0102932_10278593	F086685	MIELTSIPLVLWAVGCAAFVIVGHELTHYVAWLPVATSIEYHFEEQYIEAEYPDTPFARKWAAVAGISPIIVATGLVVALIAIGWDPAASWHHITASAAVVLYGISGGKSDFVALFSLVQRLRSPAPRD*
Ga0102932_1042426	Ga0102932_10424263	F005874	MVEIPSVPPDDELSPQQLYDRVEQVTNLDADELRAFKQSDYNAAYLEVASDAAQPGDEPLDDAIRLLETPGYEYSAVDDGFNEVEEARELLDFQRRTQAQILSQGLGENYLTDLEVMQVREAASIRWGIDPDDEREWL*
Ga0102932_1055453	Ga0102932_10554532	F086685	MIELTTIPLVVWVIGCITFVILGHELTHYIAWLPVATSIEYHFQDQYIEAEYPDTPFARKWAVVAGISPVIVATGLVLALIATGWDPTATWHHITASAAVVLYGVSGGKSDFQALLNLGRTRRSPAADD*
Ga0102932_1060424	Ga0102932_10604244	F042291	MPTYQSYNKRINAWVKYHWTKEGWEVKDVKQREPKKPFKGVPKKGKGRK*
Ga0102932_1075450	Ga0102932_10754503	F015275	MKSEFGFIDPGAIMGVVVSLIILAVGVFAFFVTISEIPTDGDTTTAAAVNNVSDTGNSVFNIIGIVLIIGAIMSIVGLVYNYVR*
Ga0102932_1079014	Ga0102932_10790141	F100427	MTEVPLLVWIPLWALIATIGHELTHYIFWVPIATDIEWDVWGNELEIEHTAGPWSMRWAIIASMAPLLVGTVALMYWLSTQPAVTAHSAIMAIGMAVYTFAGGRADYSRLTAAVTARLA*
Ga0102932_1086895	Ga0102932_10868951	F097996	MAINKDGMHPRYLGWQVDWPVFIKMPFSADGKHWKKREHFNWAERDLEIKDVASLYAQGFIYHNTELAKESKVGDRLSEMNADDLKSLVTQLNAIVKERTTSSQEYNNKRCKQSKIEDKQRGLIRRFLNRNPWVIEDFYRIRDHIIGD*
Ga0102932_1101512	Ga0102932_11015121	F014681	MKRRYGHNMNFPTNFLRSLKRDCKGMVDLGVVLMIGIAFVGLMVVAYIVWTIDDQLDATGSAANSLSNITGGFDDAVNLLLIAVTITILAIAISALLMLRGRT*
Ga0102932_1111849	Ga0102932_11118493	F042291	MTVYQAYNGRIKAWVKYHFVKGGRAEILNVKQKEPKKTFKGIPKKGKKK*
Ga0102932_1118964	Ga0102932_11189641	F073153	IDGNIEGILTRLGNQSETIARIDLLVEEMQEMQTELEHIEVRLNTLESRID*
Ga0102932_1145880	Ga0102932_11458801	F100495	MSYIVTIHATFDNKADADHIYDQAKSVATNASVARIGEPSERTSHCGVFDEQADGSLIKDRQWHIDRFGIVRETDPVPDDVIPDWIQPTGSQDAYPVNDVFGNVTRVQHNGQVWENTSAA
Ga0102932_1147167	Ga0102932_11471671	F100427	IEWDVWGNELEIEHIATPWAMRWAIIASMAPLLVGTVVLMYWLSTQPAVTTHSAIMGIGLAVYTFAGGKADYGRLTDAVTTRLA*
Ga0102932_1151173	Ga0102932_11511733	F005874	MLSPEELYNRVEETVNLSVDDLFAFKRSEYNEEYNARKSDQAQAKDEPLDDVIRLLSTPPEAWKDEDDGFNEVQEAEELLDFQRRTQAQIASQGLGMNFLGDDQDMTMREAASIRWGIDPDDEREWL*
Ga0102932_1151804	Ga0102932_11518043	F005874	MAMIPNDPPDDELTPRQLYDRFEDAVNLDVEELRAFKASEYNEVYNAMKSEAAQPGDEPLDDVIRLSETPASMWRDVDDGFNEVEEARELLDFQRRTQAQIKSQGLGENYLTEARNMQKREAASIRWGIDPDDEREWL*
Ga0102932_1162601	Ga0102932_11626012	F097996	MAINRDGMHPRYLGWQVDWPIFVKVPFTADGKYWKKSEHFNWAERNLEMKDVASLYAQGFVYHNTELNKANKVGDRLSEMNAEDLRSVVTQLNAIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWITEDFYTIRDTILGD*
Ga0102932_1165996	Ga0102932_11659963	F100427	MTEVPLLVWIPLWALIATIGHELTHYIFWVPIATDIEWDVWGNELEIEHIATPWAMRWAIVASMAPLLVGTVVLMYWLSTQPAVTTHSAIMGIGLAVYTFAGGKADYGRLTDAVTTRLA*
Ga0102932_1171291	Ga0102932_11712912	F050177	MARVPSDPPDDALTPQQLAERVDQVTNLTVEELEAFRESEYNEEYLAANSERAQRGNEPLDDVIRLLETPPEEWRDVDDGFNEIAEARELLDFQRRTQAQIKSQGLGSNTIAEYDDMTFREAASIRWGIDPDDEREWL*
Ga0102932_1174995	Ga0102932_11749951	F055545	LKLSTVGGAKVKADVGTSHARNVAHQAADGNPVSCGEH*
Ga0102932_1271235	Ga0102932_12712351	F075754	ARVDDTSEWYAAQVGRSEYLRDSEEDADMHHRKGGVVAEGLVKAIFAGMEWWDTHSFDTFLGGTRYDIISRGLNRGEPRQHYVHKIQAKKEERAKPSTHYYAVVRNHPDYWLIGHINSIRFWYLCDRSAPEFWDDEQFDGGFLSYEHFEQLPITEPISPPPGIEVFGQG*
Ga0102932_1281033	Ga0102932_12810331	F056354	MIVEVFIALSIFATVITGMAIRGDIPELLGAFVGAVMSIVAAINALDLFVITNSGNVKNLDPQVDIALVLLLIFIVNIIFIF
Ga0102932_1287409	Ga0102932_12874092	F104555	GGEHLAALPVTDDQTIRQAIRHSIATNGIHNAGEHWAAVLDTIGPFPKAHLDTIKVIFNQEVSACF*
Ga0102932_1300772	Ga0102932_13007722	F086685	MIDITTIPLVLWVLGCITFVIIGHELTHYIAWLPVASSIEYHFEEQYIEAEYPDTAFARKWAVLAGISPVIVATGLVLALMLSGWEWLADLHHTTASVAVLLYGISGGRSDFDALFNLVRRLRLRAASD*
Ga0102932_1371750	Ga0102932_13717501	F005874	MRMRARKATMAMIPNMPPDDDLTPAELYDRVEDITNLTVEELQAFKGSDYNEIYNARKSDAAQRKDEPLDDVIRLLSTEPAEWRDVDDGFNEVDEAEELLNFQRRTQAQIASQGLGKNYLTEEQDMTMREAASIRWGIDPDNQREWL*