3300007604: Marine microbial communities from the Southern Atlantic ocean - KN S14 DCM1_A metaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300007604
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0125879 | Ga0102771
• Sample Name: Marine microbial communities from the Southern Atlantic ocean - KN S14 DCM1_A metaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 91985644
• Sequencing Scaffolds: 28
• Novel Protein Genes: 29
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	11
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201	2
All Organisms → Viruses → unclassified viruses → Virus sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → unclassified Rhodobacterales → Rhodobacterales bacterium TMED271	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Ochromonas → unclassified Ochromonas → Ochromonas sp. CCMP1393	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Lipsvirus	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Atlantic Ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F001145	Metagenome / Metatranscriptome	765	Y
F001416	Metagenome / Metatranscriptome	699	Y
F005911	Metagenome / Metatranscriptome	386	Y
F006662	Metagenome / Metatranscriptome	367	Y
F009691	Metagenome / Metatranscriptome	314	Y
F012124	Metagenome / Metatranscriptome	283	Y
F013897	Metagenome / Metatranscriptome	267	Y
F014748	Metagenome / Metatranscriptome	260	N
F020701	Metagenome / Metatranscriptome	222	Y
F033464	Metagenome / Metatranscriptome	177	Y
F036277	Metagenome / Metatranscriptome	170	Y
F042354	Metagenome / Metatranscriptome	158	Y
F054104	Metagenome / Metatranscriptome	140	Y
F058219	Metagenome / Metatranscriptome	135	N
F059997	Metagenome / Metatranscriptome	133	N
F060049	Metagenome / Metatranscriptome	133	Y
F068484	Metagenome / Metatranscriptome	124	Y
F068862	Metatranscriptome	124	N
F077350	Metagenome / Metatranscriptome	117	Y
F082267	Metagenome / Metatranscriptome	113	Y
F084330	Metagenome / Metatranscriptome	112	Y
F090442	Metagenome / Metatranscriptome	108	Y
F095423	Metagenome / Metatranscriptome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102771_1006217	Not Available	737
Ga0102771_1008996	Not Available	808
Ga0102771_1013300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201	514
Ga0102771_1036246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201	515
Ga0102771_1061023	Not Available	1146
Ga0102771_1066673	All Organisms → Viruses → unclassified viruses → Virus sp.	982
Ga0102771_1127063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	596
Ga0102771_1138491	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	626
Ga0102771_1174314	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.	577
Ga0102771_1185263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	539
Ga0102771_1190216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → unclassified Rhodobacterales → Rhodobacterales bacterium TMED271	533
Ga0102771_1190365	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Ochromonas → unclassified Ochromonas → Ochromonas sp. CCMP1393	521
Ga0102771_1197017	All Organisms → Viruses → Predicted Viral	1300
Ga0102771_1202462	Not Available	510
Ga0102771_1205392	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Lipsvirus	595
Ga0102771_1207123	All Organisms → cellular organisms → Bacteria	603
Ga0102771_1207679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	557
Ga0102771_1210260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	767
Ga0102771_1217712	Not Available	555
Ga0102771_1221890	Not Available	758
Ga0102771_1227953	Not Available	568
Ga0102771_1228456	Not Available	703
Ga0102771_1229625	Not Available	582
Ga0102771_1231613	Not Available	713
Ga0102771_1237802	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Ochromonas → unclassified Ochromonas → Ochromonas sp. CCMP1393	2132
Ga0102771_1251227	Not Available	2276
Ga0102771_1261980	All Organisms → Viruses	808
Ga0102771_1263455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	749

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102771_1006217	Ga0102771_10062171	F068862	MLYKLFIALATLLVVNANAPSERSVHISTNTDVDGLNGLNLNWQVPFKVDDYTVGFRYKLNELKKYPETLFAKKVFDVADGEATVDADVNVDDKSLSANLKWVSDKLVDGMKTTFRLNGNSNDKLTSVGAEVSKNVDGHDVELKGHYDLADSRLDANGKVVIDKTTAEVSYNSGDEDIRIQLSHDLDENNSPKGSYSTKTGHVAYGWTRKWEGGELDGTYHPDNGGRAVLEWTD
Ga0102771_1008996	Ga0102771_10089962	F005911	MSLKTRLLTMLNSKKGSALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSIKGKIDGADINQARLGSGTEADIESPVSELFHNGNFITLKEMVKKAVIIVSDDPTATARSGVDTAYDIDNSGVLIKFADADGTVIADGTGGDTIVADVHLFVNLAGTADANTNAPYTAGEPFYYILMDDVTAGFNDATKRTIDLTQFPTGILATNDGG
Ga0102771_1013300	Ga0102771_10133001	F036277	LCSNPFVDKSTQYELHPPNKNKSVLSYLGSASLK*
Ga0102771_1036246	Ga0102771_10362462	F036277	LCSNPFVDKSTQYELHSPNKNKIDLNYLGSASLIN*
Ga0102771_1061023	Ga0102771_10610231	F077350	LEVAVIDSALANQIQKTETDPNQPDIQLLLEELEGKLRGALDVLSPSVKAMCDNLKEAASDIRTDKDATKLWGTLNDLQVFLSLVQQICTSVGTQGPKVVEFDNALGDALGTLETVVLDSEDADEVAAFVEKSLIGAFDKWGEAEAELRALTCM*
Ga0102771_1066673	Ga0102771_10666732	F001416	MPIIKKKLSIAAGAKSANVFDGTTYQTVSAGTNLIVAAAVDTAGTATADTTMDFNVNNAEFANDASVSTLVT
Ga0102771_1127063	Ga0102771_11270631	F059997	LTSLRLEKGKTLSKSAQESLMQIQDRIQEVYNDLDNILGLGEEEAEQPKDDIDALWLNIQEVLARSQGVVNEGDKVE*
Ga0102771_1138491	Ga0102771_11384913	F006662	VRTLTTKEYEVISQIYNSTDETEANLSFEFGIQNDLYYQLFHSYTEGNQS*
Ga0102771_1169457	Ga0102771_11694571	F054104	VVETKYKLVKNGLTNTFATTEELIKNFENKAFVSLQRYIILVTASRILRKFLFLSQNEQSSLIDSTISKLGGFKR*
Ga0102771_1174314	Ga0102771_11743143	F013897	MNLTKDQLLELINTIDYATDNDASYEEYTIIRSGTFDLEPIRDILY
Ga0102771_1185263	Ga0102771_11852632	F095423	TNFTSNKALLVFFGLFFAFSISADPFLHDDSSEENSLECHICSNDVTESTIEINKIDGITKELPRNISATSLLDPQLSTSYSTRAPPTI*
Ga0102771_1190216	Ga0102771_11902161	F084330	MASRLVSVSKNIFGKAFYSNLWIAISCGLVSQVIGYTKYEGYFDLYWIIMKDGYLYFNLYPSFDELNAVLFIRVFLAVFVFLTVKDKLKGN*
Ga0102771_1190365	Ga0102771_11903651	F012124	MLFLLATPEYNNIQSNTTKVRVHLRNGVAEIFDQHQDLMGKIDNNILEVETNFENKVEKLLFVLQDGVFIVSNQGLDVNSENKGTGIYVYAKKVKEITSSVSVEDVSKEYEEKKVSLEIENQKLGASEEADKAINSKIFVLKDEVEF
Ga0102771_1197017	Ga0102771_11970171	F020701	MSEIESQNSVEAPEQTAFKKSFKPIIGTCLAISALAAMALTSSPAAVVNPGKPVASTTQLEVVKQGKQPIKDGCANIYGSDPDQVFIDPDTGLRVLTAVFTICDDRSLNGVALDSLGFDHQNDIDIGLTYVETGPGCWLTLYDGPNFNGKTAVISPQTSMHLKHVGARNWNDLTRSITTRSSTGDGVALYLSHRVALGSVNDHCVAMYNANPEIYPKADGLYLCGDKNVAKTWHFDLNDVIEQGFNIDGSHFGIKYIMTGRKVTLKVFDGPTRNTVNHGPLEMSGHETLDLETVKYGDDHWDSKAKSFTLVEV*
Ga0102771_1202462	Ga0102771_12024621	F068484	LMDTNDLTVGDRVSIRTVNDHTYETRTVDYMNFNGEAGDNYFTVSQPFTAKHSEARIHLNYKGTQSSQECSGRGLCDGSSAECQCFKGYTGVACEIQNALAA*
Ga0102771_1205392	Ga0102771_12053922	F014748	RNRKQSFLGDRPMNIGDRVQTLNTFVPITGEIVDMYKNLVTIADDDAETVDQLLSFHADDLEVIS*
Ga0102771_1207123	Ga0102771_12071231	F000710	MPMNDISYRQGLRTKGFQTTVPTTGADQTLSLSGLAKQFEGLVFSSTTSAAPQTIVDPAQLKVTLIINNDVVIDDDVAFNYALTSNGSFSGGFPFFIPFPRRLTGQDTILLKITNSSGASQILNTTVYYRNEI*
Ga0102771_1207679	Ga0102771_12076792	F082267	DWQVIVVAVITVGALIGQIWSKYDKWKNPENYDFDWKAELEEE*
Ga0102771_1210260	Ga0102771_12102601	F009691	MKTELNSKDYVTFARRFVKETVATMDIEELRGIVIDHIHEEIQEGENTYGQEGAFEEMMAWSEDVFLDVAKDF
Ga0102771_1217712	Ga0102771_12177121	F042354	VFGQANISAGLSYGSFNYDISGTKYTGDGGVLNLDGQLSPSITYSLSMSDGKFDDQVLSNSEGSITYNVYPNIGVHFMGSQIKLATVQETDTSLGFSYNITASTLGIKVFVGSDINNYGKFYTYGTKINLDVARGSSLILSYKTEDRKQKATTMDARFVYDLNSRLGLNLGYKSTETKNAAGTA
Ga0102771_1221890	Ga0102771_12218901	F005911	MSLKSKLQHFLNSKKGNALLLATAGAIAATFSVYFFVSLTNLSEDSKQRVAHLYNAYQMGQSLKAKIDGADINQARLGGGDEDEIEAPIDDVFHNGVFITLKEMVKKAVIIVSDDPTATARIGYDIGYDLDNSGVLIKFAAADGNVIQPDQGDADDTIVSDVHLFVNLAGTADAESNAPYVDGTPFYYILMDSNQAGLAASLETIDLSIYASGILATNGGGPQAEVSVVLPQ
Ga0102771_1227953	Ga0102771_12279533	F090442	FQLEYESGKSGIRRGIPANPKKCIGKKHTLTPTNVDQK*
Ga0102771_1228456	Ga0102771_12284561	F058219	LMSKSKKQLKKDLKYLKKHLDDNKEINQIIEHTKKIGISSEYFCEEFVFIPDGETPEECARFHDVEYLDITEFNYHHWIGNKMEDY*
Ga0102771_1229625	Ga0102771_12296251	F005911	ATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSIKGKIDGADINQARLGSSTEADIESPVSELFHNGNFITLKEMVKKAVIIVSDDPTATSRSGVDTAYDENNSGVLIKFADADGTVIADGTGGDTIVADVHLFVNLAGTADANTNTPYTAGEPFYYILMDNVTAGLDASAITIDLTQFPAGILATNDGGPQA
Ga0102771_1231613	Ga0102771_12316131	F005911	KGGRKTMSLKAKILKMLNSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSLKAKIDGADINQARLGGGTENDIEAPIDDLFHNGNFITLAQMVKKAVIIVADDPTATARSGSDMAYDLTNSGALIKYADAAGNVIEADSDDGSDSVPIVTDVQVFVNLAGTADATTNSPYTAGEPFYYILMDADTAGLTASDITVDATQFPTGILATNDGGPQAEVSVI
Ga0102771_1237802	Ga0102771_12378023	F060049	QSNTTKVRVHLRSGIAEIFEQHQDLMGKVDNNIVEIETNFENKLEKIWFVLQDAVFIVSNQKGNATGSAFENEGTGVYIYAKRVQEINSSVSMEELSKQYEEKVKLFETEKQSLVGENIDVSDETSNSKLMLIKDEIDFIKKVMAVVKDFKG*
Ga0102771_1251227	Ga0102771_12512272	F001145	MDFSFLLNNEEAEALIQLNPNFFETNVINIGLLIGILIYANKTSFSVGLENRQKEIIQTIENAQKDVVNASNYYYLAEKGFTQSLFWLQSWKNLYEKDKVEIVETKYKLVKTGLTNTFSTTENLIKNFENKAFVALQRYMVLITASRILRKFLFLSEAEQSKLIDATISKLGGFKK*
Ga0102771_1261980	Ga0102771_12619801	F033464	IFYLSLLASHEPVHWTIKCDTWSELAAEVRQDQYLDEQSKSDLIYYFSTKVEEECNEIGRK*
Ga0102771_1263455	Ga0102771_12634552	F042354	MKKSNPFVILVALLLSATSAFSQASVSAGLSYGSFNYDISGTKYTGDGGVLNLDGQLSPSITYSLSMSDGKFDDQVLSNSEGSITYNVYPNIGVHFMGSQIKLATVQETDTSLGFSYNINTPTLGINVFAGSDINNYGKFYTYGTEINLGVTRGSSLILSYKTEDRKQKATTMDARFVYDLSSNLGLNLGYKSTETKNANGSAVVLKGNTTYAGIVYRF*