3300007599: Marine microbial communities from the Southern Atlantic ocean - KN S15 DCM_A metaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300007599
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0125888 | Ga0102780
• Sample Name: Marine microbial communities from the Southern Atlantic ocean - KN S15 DCM_A metaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 69872789
• Sequencing Scaffolds: 30
• Novel Protein Genes: 36
• Associated Families: 30

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	12
Not Available	12
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Haifavirus → Haifavirus tim68	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Atlantic Ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000075	Metagenome / Metatranscriptome	2622	Y
F000155	Metagenome / Metatranscriptome	1877	Y
F003068	Metagenome / Metatranscriptome	509	Y
F005911	Metagenome / Metatranscriptome	386	Y
F006348	Metagenome / Metatranscriptome	375	Y
F007527	Metagenome / Metatranscriptome	349	Y
F007891	Metagenome / Metatranscriptome	343	Y
F008624	Metagenome / Metatranscriptome	330	Y
F010423	Metagenome / Metatranscriptome	304	Y
F010768	Metagenome / Metatranscriptome	299	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102780_1001936	All Organisms → Viruses → Predicted Viral	1167
Ga0102780_1002297	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	1293
Ga0102780_1004709	Not Available	746
Ga0102780_1005267	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	517
Ga0102780_1006547	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	1205
Ga0102780_1008303	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	603
Ga0102780_1008497	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	815
Ga0102780_1009498	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	659
Ga0102780_1013218	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	542
Ga0102780_1020555	Not Available	557

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102780_1001936	Ga0102780_10019361	F008624	FIMNPQSHRSTEELKTIVKALSKLRILNTPEEDQRLFDCENELRKRKREDDFINAHFQVITIS*
Ga0102780_1002297	Ga0102780_10022971	F021310	MNPSNIQMKDTNDGVVVKADGRTLLAKLVFAGSARLAECDLGIDELRAAFKRAHGDEASKGTLTYQLNENDEDALQLVDDNDLQLAKKHGSEPLKITSTEVDTRDVFDHASAELAKHGLDAPSTELKKLLDVLQFAPRRLVKCGLAPPKALKNTLKGDEAEEPEDVYVVEMAEALSIEDEPKPATTGLAALQKTANEAAAALDKADATLDDAALAAKLQAEEYGNHDVVLEAVTGRGIKLDSNTLHALLRMLHCRPARFVRLGLVEDVKAARQAYKLGGKACANEWFRNKGCHGRGGKGW
Ga0102780_1004709	Ga0102780_10047091	F005911	KKKRGSRIMCLKQRLLLLLKSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSLKAKIDGSDTNQARLGTVNEDDLEAPIDDVFHNGKFITLAVMVKKAVIIAADDPTATARAGVDTAYDQEKSGVLIKYADSDGNPIAPTETGLAGDTLVADVQLFVNLAGTPDATSNTPYADGEAFYYILMETNESGLTADDITVNLSQFPAGILSTNDGGPQAEVSVVLPQDDEE*
Ga0102780_1005267	Ga0102780_10052671	F016280	LAKKHGSEPLKITSTEVDTRNVFDHASAELAKHGLDAPPTELKKLLDVLQFAPRRLVKCGLAPPKALKNTLKGDEAEEPEDVYVVEMAEALAIEDEPKPETTGLAALQKTANEAAAALDKEDATLDDAALAAKLQAEEYGNHDVVLEAVTGRGIKLDSNTLHSLLRILYCRP
Ga0102780_1006547	Ga0102780_10065471	F021310	MTSNNIQMKDTTDGVVVKADGRTLLAKLVFAGSARLAECDLGIDELRAAFKRAHGDEASKGTLTYQLNEQDGDALQLVDDADVALAKKHGSEPLKITSTEVDTRDVFDHASAELAKHGLDAPSTELKKLLDVLQFRPRRLVKCGLAPPKALKNTLKGDEAEEPEDVYVVEMAEALAIEDEPKPVTAGLAALQKTANEAAAALDKEPDATLDDAALAAKLQAEEYGNHDVVLEAVNARGIKLDSNTLHSLLRILYCRPARF
Ga0102780_1008303	Ga0102780_10083031	F016280	KITSTEVDTRDVFDHASAELAKHGLDAPATELKKLLDVLQFAPRRLVKCGLAPPKALKNTLKGDEAEEPEDVYVVEMAEALAIEDEPKPVTSGLAALQKTANEAAAALDKEADATLDDAALAAKLQAEEYGNHDVVLEAVTGRGIKLDSNTLHALLRMLHCRPARFVRLGLVEDIKAARQAYKLGGKACANEWFRNKGCH
Ga0102780_1008497	Ga0102780_10084971	F051931	MPTYTYLVACLTPEYPHDITENFWYYQPQRGPPFDDRCVAIGSKCGGTCGKAARNVKNDEEFCVNGEIPLDKLVSERTAVEWGITEGSPIKKRQRKRWVDGHFDLKGWKYALHVLFVLMMTIMGTSAWVTFLPGTGVNKDPLPPTMREVEDHMELNAETQNPLCLVAFSISASEPRMMVLRNLVGKMMAWVVRRKFVFESQAMTQKVQLFEEESSLKHLHSPTRVRISEDNNMAYTERLKAFYGKYDPMKVDGVAVLLKKYKGKEEELMEE
Ga0102780_1009430	Ga0102780_10094301	F060931	ATTPLAHKFNEETMIEDTASSHEAIVAGRKGVYLFKRLVLGARKGTADYVAAVFRWSKGAVQLSWTSFWFPLHMYLYPWLVLFFVVAPIMATVIYFQATRLDHCHRTKYSSKMWATLGVDKDDQWCRLGPTVGLISDPIFVCYGIYMVLMSIASFNNPRIGANLIMFENITYFFSSQTAYFWLAIPCVMTMAPDPSALTYDAVTLTIGGLWVEVHMNYIYGHIAAWAPLENNEAPD
Ga0102780_1009498	Ga0102780_10094981	F018182	MRAAHRIQNRPKTRSETQPPTRAQASFRPSRKILNESVKKQEEQQATMTSNNIQMKDTNDGVVVKADGRTLLAKLVFAGSARLAECDLGIDELRAAFKRAHGDEASKGTLTYQLNENDEDALQLVDDADLALAKKHGSEPLKITSTEVDTRNVFDHASAELAKHGLDAPATELKKLLDVLQFAPRRLVKCGLAPPKALK
Ga0102780_1013218	Ga0102780_10132181	F016280	STELKKLLDVLQFAPRRLVKCGLAPPKALKNTLKGDEAEEPEDVYVVEMAEALSIEDEPKPETTGLAALQKTANEAAAALDNEADATLDDAALAAKLQAEEYGNHDVVLEAVAGRGIKLDSNTLHALLRMLHCRPARFVRLGLVEDIKAARQAFKLGGKACANEWFRNKGCHGRGGKGWG
Ga0102780_1020555	Ga0102780_10205552	F088935	MASIGGLDVAYGARLQVVRTNVMCLALASTGLANATTVPKYILNTYKEALKGTVIEPDFLYIYEITDMDGSGFTTAAAANSLFNQDNSGDGTADVTALEVNGVLRMISQCPLAVNSAFADTTAAHDAEGEAHTAHNYY
Ga0102780_1135022	Ga0102780_11350222	F024323	MSIFDLGWFTISFIIIGIVLLIDPKSSMTGASSNAVAGLFASQSSGQQFIYKFSASLITLFFILTTVLSLVE*
Ga0102780_1146979	Ga0102780_11469791	F005911	PHKNKRGNTTMSLKKRLLKLLKSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSLKGKIDGADINQARLGSLSEDGIEAPIDDVFHNGKFISLKVMVKKAIIIASDDPTATARAGVDTSYDLDNSGVLIKYAGADGSVIAATATGAGTDDIVADVQLFVNLAGTPDAASNTPYTDGEPFYYILMDDASAGLAADDITVDLAQFPAGMLATNDGGPQAEVS
Ga0102780_1149446	Ga0102780_11494461	F067821	AAFNCANGNSLGTTGSARIYVGWQDFQGSTTTSYGANQGPQYYTKFNTTWDGTWGMIYSPYYYYACGINAFCMSLENPRKFISINQTKSDRANPYLAWGRTGFHGGWSDNTDGDTMRVYSWSFDPTDSDHTTTTKVYQGSSSGDGVIRNDNAHVGSATVTNKTGNHSLTESRTGLHGGNYTTCYPVMAQIDWWGNYGNADSNFGGNFGE*
Ga0102780_1168151	Ga0102780_11681511	F003068	IKYKDKIMKKILAIVSVLSLFTFSANAIDTSDVSVTAGISANSAVYGATGKETNRDESNAIRDVENESGVFTDSHMSGFLELNVGEFISLGYEHTPDSITTPQNKRVTNQNSETTVSADFNDLNIAYLKLNIPGGVYLKAGYVETDVDVKEKMASGSTYANVSTEGSLIGVGYSQALQGGVAIRLEGSYMELDDVMTSNGVAKDGATVANGGRNQIDVSDMEGLNGKIALTFT
Ga0102780_1171498	Ga0102780_11714981	F042743	AKKDLETASAIREKEAADFAEETGSQKADLDAMTGAIAALEKGMGASFLQSQKARVSRVVKASQTVDDFERDEVLGLLQGKNPFGDYGARSGEIVGILKAMKDEMDKDLGGAVGAEEEAVKAFAAMTDAKKSEIAAAGEAIESKSVRSGELAVEITTTADDIEDTTKEMNDTQAFIANLASMCETKKKEWAERSKMRAEEVAAISEAIKILNDDDALDLFKKTLSLPQVSMGFLQKKS
Ga0102780_1173879	Ga0102780_11738792	F051155	PDEGSSAKVKGTRIATAIVAESPGRAPIMMPAKTPENAKPKFIRLNDDKKSVKIFVINFLFT*
Ga0102780_1193219	Ga0102780_11932191	F000075	AVAANRYDSMNEDDLLVNLESTLSSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0102780_1201620	Ga0102780_12016201	F013133	LTFGSQAEPYGLAWGLHRPSTNWFVSNPRDHMVTNGVGVGLNKWGVGADLFWGGDSVDEEGTSELYWAGRFSYGLNLLGIDSNFGLSLNSNEAQLIDVSAGNNVFEASFEYDLSEEADGAYWLRGVVTPTQVQGAFLLIGLNSDDVVTYGVGYKCSDNMKVVSEFTSGNDSDGNEINNDFAIRASYSF*
Ga0102780_1201829	Ga0102780_12018291	F056636	LRAQQMFFVTAPLHTLAIFQGTQDSWKILFAAKDASRWASFDSINAITTAKLWVLTMMVMLSSSIVVGLVRIGTAKKPFEEIERWLGVIMSFVFLSLTAVPSAAMFFHKRVTSIKAKPSLMDRCTAGVFGKALVITPSLFYMFLYSAAIVVLLALRGRAQNAGF*
Ga0102780_1202206	Ga0102780_12022061	F017306	MSSMMDNLQLSQRVGPSDYGCDPYQVVVSAANGDELVHEYCLYSSAYGGPVRPDAVTGLRAEQIDRGRATVRWEWSENSFDLASPGAYFERDVILDPLAWAGPVRKTPKTKRVAPAPKVEVSRELRAADVAVKSEWRQNGCDDEWEIHVSHAATGSRLVWKGTSTAENQDIKKLRHVGADGMVRIDFVYYVGENGNNSSSDRSLFVKLGETGIEWVPKHVC
Ga0102780_1204026	Ga0102780_12040261	F007891	IKVLKKLYFKLFEFFRVRVFPKPVENVILTLNSFKKMTLYSNFFSNAVNSVETKENEVLITYSSNIAKEYVYNCENVPEFTNNLCSVLISNELQQDGGSVGSFIHRSRKDQVLTEQ*
Ga0102780_1204501	Ga0102780_12045011	F007527	VFTRGISKGLKASIPFGGQTFPTSIVGAMLAAKKAQKKAKKNIISDTINKIIP*
Ga0102780_1204534	Ga0102780_12045341	F028521	MATYTSGAINEVLIGTGVLYVADRTASGLAFPGDDGSGNWQSVSTASAAWRDIGYSEDGWTLEMDRTFEDILVAEEVDPIKTIKTAQEARLMGELSQASLKNLSVAMGQIDSYVSEDDSDFAAGYDVVKAPITDSFSEMAALLLAEGPAGADRHVQMPRTVSVGAFSMSHAKAPQKVVIATEFKLL
Ga0102780_1205796	Ga0102780_12057961	F005911	KTNKKKRGEKTMSLKAKILHLLNSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSIKAKIDGSDINQARLGTGTEADLEAPIDDLFHNANFITLKDMVKKAVIIVSDDPTATSRSGSDTGYDLDNSGVLIKFADADGNVIADGAGGDTVITDVHLFVNLAGTADADQNLPYDPGTPFYYILMDHDTASLDATDRTVDMVQFPTGILATNDGGPQAEVSVILPQDG
Ga0102780_1207748	Ga0102780_12077481	F065812	MGDILLPRLNMDGKPIANKYCEGKMKRTLERGLKDLKPLKRKL*
Ga0102780_1209341	Ga0102780_12093411	F010423	MLGLFGIVRAEEAVVTETTQPVVSVTGEFSTDITFGDATTFASPYSGLVLSGDGWVLSTNLSDGMVNIEEAKYSWNVVDGVTLTFGSQAEPYGLAWGLHRPSNNWFVSTPREHTITNGVGFGMDKWGVGINLFYGGSTEDVLDEEGVVTEEGSLYWASRFSYGVSFAGIDSKFGLS
Ga0102780_1210671	Ga0102780_12106713	F029472	IKMLSRKTIENLTDKLMVEVANYVTEDPRFTELLNELVPEAIDLELGQVDDYSVVQIITSIQQHLRCSPNHSQIHYPRCPL*
Ga0102780_1211725	Ga0102780_12117251	F087242	FFGQAMLERAKAMFDDRGLRHELDAFLQSGVSNTHSPTPRRMSWVGIDILPNQSLALHSHPNVEFVYVAEGVMHEWRCPKCPVKRSYVPERIAANGKTVEKYWGPDLHNINAKDNGMFRHDAYSAGDMFVNAIGDVHQSYTREEGVKLLVMWGDGNADVPLEQLPRHSDFLNVGAAKAWD
Ga0102780_1212399	Ga0102780_12123992	F000155	FLRPGVLGGAYAAVLAAAVAANRYDNMTEDDLLVNLESTLSSALSSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0102780_1212589	Ga0102780_12125891	F067780	VLQPIELASNRTLVLHTPAALFNRSVLAVVATTREKMPRGRRAALLLAAASPARALIAPHAATRTQTRRNLATTPDEISHAAHYNAYDYNADSQSASEDDWRSMATAAGAIDEDPAEKWAGLFTPWDASQETAAEDTSLEKIYAVQRDPVNLPPTPQQNFGGMFSPWSDEDDSLDKIYAVQSDPV
Ga0102780_1213532	Ga0102780_12135322	F017325	MSDYFTEVNKALKEFHNQYKPIKPLYMLIKVDVDADIVHNQCQAGKYAVNHCNNMQYELADWYYPDDEQFPYIAK*
Ga0102780_1214648	Ga0102780_12146488	F006348	MEVSKMVTENTPYRNKKYIVEDLGFDPKFKNEREIQSLEIKRDNAYGVWDARGRNEDERQNDLFNKVQDYMGVYLCSLSFCENRPHPLTSFK*
Ga0102780_1216473	Ga0102780_12164732	F022419	MSLRYAALLAPACAFTHPQQPRRIVVRRDYSSIDDVFDSVFGDPWSPFGLSRRDPWGMRRRSPLAQQFGQLKRLSQAFEEQLQRVDEDDFLADTPLGQRRQLGTPKEDAPTKTDESTSSLYEAPKAEGDEAVAPAAPRGYAYSWSSSS
Ga0102780_1217399	Ga0102780_12173992	F010768	MKEVLNGGYNVHPVPPPNSEIKERIRRRYEGKRIKIEKLFILGYTTSGDP*
Ga0102780_1218208	Ga0102780_12182081	F087242	ADFPGSFPARFLRQAWGLEGPHSPEGAALVNATGVCTSSEITDESFGQAMLERAKALFDDRGLRHELDAFLSSGVSNTHSPTPRRMYWVGIDILPNQSLALHSHPNVEFVYVAEGVMHEWRCPECPVKRAYVPERMETNGKTVEKYWGPDLHEVNAKDNGMFRHDAYGAGDMFVNAI