3300007527: Human subgingival plaque microbial communities from NIH, USA - visit 1, subject 763496533 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007527
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052756 | Ga0105486
• Sample Name: Human subgingival plaque microbial communities from NIH, USA - visit 1, subject 763496533 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 159677406
• Sequencing Scaffolds: 16
• Novel Protein Genes: 19
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	8
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F030786	Metagenome	184	N
F042387	Metagenome	158	N
F043990	Metagenome	155	N
F046432	Metagenome	151	Y
F047127	Metagenome	150	N
F051212	Metagenome	144	N
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F059076	Metagenome	134	N
F061927	Metagenome	131	N
F063778	Metagenome	129	Y
F071327	Metagenome	122	N
F080165	Metagenome	115	N
F081454	Metagenome	114	N
F089056	Metagenome	109	N
F090516	Metagenome	108	N
F097490	Metagenome	104	N
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105486_1000669	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	17869
Ga0105486_1001034	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	13243
Ga0105486_1001109	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	12549
Ga0105486_1001190	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	11932
Ga0105486_1001280	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	11446
Ga0105486_1001982	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	8447
Ga0105486_1002413	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	7315
Ga0105486_1002674	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	6787
Ga0105486_1003589	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	5569
Ga0105486_1004131	All Organisms → cellular organisms → Bacteria	5021
Ga0105486_1005142	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4256
Ga0105486_1011730	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2217
Ga0105486_1013684	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.	1953
Ga0105486_1016495	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1673
Ga0105486_1025209	Not Available	1159
Ga0105486_1032671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	929

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105486_1000669	Ga0105486_100066919	F097490	MNKKMNVFCKIILPLLCIISCSERKEIEVYNMKINENKKEVLVEIRNNTENNYYLLSPVVSIMTKYLQHIGGEMIEGQIHHKKIDNIVCSVYIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNLFSNSKENKKMYFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0105486_1000669	Ga0105486_100066920	F089056	MNVFCKIILPLLCIISCSKIKEADNTKTLEKNYAFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKEKIVFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ*
Ga0105486_1001034	Ga0105486_10010342	F059076	MTNRILLLGLLLGGVSINAQNINETNAAGKTGQKVGINTTIPTRTLTIKNSTPNDGKPLLRLVDSPVYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYQGLPINNMSILTLTISNVKGDWISSFDTGINYNKYAVAIMSATFKMPSPASGGIVMLRGGNNTPSVKHGTDNYGVTTAPATVLLKQHGANWAIYADYPNIGSYEFTSGSTAIGKLVNGTWVITLLVGKRDAVNFTEIKFDQNGQPEGIGPNNTTYTTQLDNFLKKLE*
Ga0105486_1001109	Ga0105486_10011092	F071327	MEELFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSETSGFSSYFRLFEYGISILLCAGMMTYVYKYIKNNKQLSLKIVVIALVAALLFEYAYPWRLIFG*
Ga0105486_1001190	Ga0105486_100119010	F030786	MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSATKGGSAMVAKKISLTDIIDGDDSETGVLKVKYFDDEGVDKIFENNNNRILNAINSQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0105486_1001280	Ga0105486_10012805	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKGVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTIKIIIKTDKKEYSKTNIQNNTTWDYITKQVIDIKYSKLNNHLNLKK*
Ga0105486_1001280	Ga0105486_10012807	F047127	MKKTFAFILLSIISLAKAQQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDRDIREILEKYNSK*
Ga0105486_1001982	Ga0105486_10019823	F061927	MKNSIFILSAMFILGACSSDSAQKVTEKIKNTYSDGLRKTFIEEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIDSCIGE*
Ga0105486_1002413	Ga0105486_10024132	F081454	MKAFKFILLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMKMNIKYTLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTNQNIDMTINLKLKTELLTLENTSKAKSVITQQKIK*
Ga0105486_1002413	Ga0105486_10024136	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHQSSNPRNSAVNGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQDFTDSYKETVK*
Ga0105486_1002674	Ga0105486_10026743	F080165	MKNKKFLLAILLSLTACNNKTKTISTLELEKTIINYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGGRYIIYGDSLYISNHYNIYEEDSLKYTFTRYILR*
Ga0105486_1003589	Ga0105486_10035894	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKQLYLSASLVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGDKKRKIDGFSQEEAEQIIKFLMNNR*
Ga0105486_1004131	Ga0105486_10041311	F046432	MQMSESRLGEVISKFQMPQDRYLIEQEGSFGRGEFFWVIKKQTTHQKYLLMNTYSHHGVESEVEFYREQGFDNLEAIPRRIETLEIPSDAEDEISKYLFGFYSIFEIKS*
Ga0105486_1005142	Ga0105486_10051424	F043990	MIKKLGIIFTFGVIILGIVVYADHKIERSWIEGEFGVNMINMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPEQFLNTTNGYYKYVVDENDDWNFGILIVDTARKEICIYNQIF*
Ga0105486_1011730	Ga0105486_10117303	F042387	KMTDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYEYSNGKLSSVIDEAVISDSGIQYKKVVTQEYHYNGSEVSVNENVKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVIDEEVTYDTKNSPYKNIKGFSALATEFCSLDKDENTIADYLNFRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVTTMVYEYNK*
Ga0105486_1013684	Ga0105486_10136842	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIAGIGFLPQDMSENSDFKKKILKKYGFSSATALAEDFRKRVLNFDEPIPENFEKDGIGYVYTVISGYDVFYNRMYMFGIHCFNGDFNVTYYDLENDAETGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKLDIEPIPAEEKVTSTQEHLAKFLAFCGVEQEVIDENKERLLKTLEEYTPDEYEGVSEAMAEMMEYTHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLYPYHL
Ga0105486_1016495	Ga0105486_10164952	F054111	MNKSLESITHEEFLKLMERLKNLQELTFLEYIMAPKADIFYFNFMEKTVKIKWDLDYGLFLEIESLSTADRDLFLNILDKEILFLI*
Ga0105486_1025209	Ga0105486_10252091	F022002	MSRRLALTLGLLLALLLSLPSHAQDGQSKVPINRTISGLTLGVTTPAQARAIIQRQGGKIIRAEGTQAGSDEQAYAVKGLKYARRSTLLAGLYFYKGHLRRIFFIFDDLDVLEQIESELEDKYGMMIESEGTSKSKGKGFFDAFTTLEVVRNFEYEGHSMFKDAYIAYTDEELDRARSAEKESEI*
Ga0105486_1032671	Ga0105486_10326712	F063778	MPETISEEAKQELLRQLQDALGLVADADTSAHDVAAITHSAADGHQLTEVMLQEMTAARGYLKSCADQIEYAISNIEAIPLDPTPED*