3300007498: Human stool microbial communities from NIH, USA - visit 1, subject 763840445 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007498
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052749 | Ga0104980
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 763840445 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 136034381
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F039198	Metagenome	164	Y
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F047126	Metagenome	150	N
F055775	Metagenome	138	N
F067844	Metagenome	125	N
F071325	Metagenome	122	N
F087335	Metagenome	110	N
F088914	Metagenome	109	N
F090513	Metagenome	108	N
F101355	Metagenome	102	N
F105374	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0104980_101307	All Organisms → cellular organisms → Bacteria	15493
Ga0104980_101533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis	13165
Ga0104980_101610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	12575
Ga0104980_102080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	9779
Ga0104980_103354	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	6060
Ga0104980_106309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3186
Ga0104980_109700	Not Available	1963
Ga0104980_112394	All Organisms → cellular organisms → Bacteria	1451
Ga0104980_113778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1270
Ga0104980_116672	Not Available	997
Ga0104980_118111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	897
Ga0104980_121964	Not Available	711
Ga0104980_128221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	523

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0104980_101307	Ga0104980_1013073	F013656	MKKIYKEPNKSETETTINVLYSENILSICTNKVDLQKKLNKLLGEPAKEHKIKRSIAGSTWNISLDDKIKIQKIILKANIYDI*
Ga0104980_101533	Ga0104980_1015331	F067844	MNTLAAETASAWYLILNRKLQTLPIYTTQLSSHLPRPLMMGTQQVSAGAAVITPQHRSYRVPQGSPQVFGGP*
Ga0104980_101610	Ga0104980_10161014	F039198	MQITNTEIQGTKYVQIYLTEEELQKKETKDLVKKYRQEKYSVAIFVSGKENYPEILEKIITKQVELNKNVC*
Ga0104980_102080	Ga0104980_1020802	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEEALTLPYLGKVYFRSRLRGKD*
Ga0104980_103354	Ga0104980_1033543	F105374	LRPGFGAAENIRYLVLSKGVFAMKKRVALLVALCIWKVVAAQTPYGEMPERFRPDTLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP*
Ga0104980_106309	Ga0104980_1063092	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQSPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACAGTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA*
Ga0104980_109700	Ga0104980_1097002	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLLLSFPFSFRTNFAQALFSSLLFVSDTCAKSILFLLFESEIAHLQGQYRFNSHRYCFSAFLVL*
Ga0104980_112394	Ga0104980_1123941	F071325	FGIVFRDFPSRLRFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFSKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL*
Ga0104980_113778	Ga0104980_1137782	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDSLFSVPYTPKENIKNPGKFIAFSAWYAAKALEMNVK*
Ga0104980_116672	Ga0104980_1166721	F090513	MAKYVRKMEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGWAAVFVPYMLSFT*
Ga0104980_118111	Ga0104980_1181112	F047126	VYLKTKKMTNISQTQAGFKSKSALEIFGGSQGFLAQNPAALVETDDIFDISDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAVASQSKSAYILSFLESPCILCSLLRYFHILSKKLQKTC*
Ga0104980_121964	Ga0104980_1219642	F055775	MAQIAQQDNLVIEVTTTVAALDGNTKKKLIECIEGGTITDVILVTKEVEKEISHARVVSWLVDTTGDSPKYTIDIINANSGAVDTIALN*
Ga0104980_128221	Ga0104980_1282211	F087335	AEERKQLCINGRDCMPELYFNDANLLPESCEEEQYAEAVLNDILAGKTANTEMCILPCFYHAPMCKGMLINLDDGTTLRIEPFLNKEGEPELLIGCVTEETVEEVYQRVSNYDFDEPCAGSMPS*