3300007296: Human stool microbial communities from NIH, USA - visit 2, subject 764184357 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007296
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052698 | Ga0104830
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 764184357 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 140103987
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → [Eubacterium] rectale	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F029444	Metagenome	188	Y
F039198	Metagenome	164	Y
F042936	Metagenome	157	N
F047125	Metagenome / Metatranscriptome	150	N
F072366	Metagenome	121	N
F074899	Metagenome / Metatranscriptome	119	N
F087335	Metagenome	110	N
F092227	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0104830_100116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	108508
Ga0104830_102192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	10525
Ga0104830_102460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	9287
Ga0104830_103094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7208
Ga0104830_104786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4261
Ga0104830_105899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3300
Ga0104830_116996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → [Eubacterium] rectale	968
Ga0104830_127777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	570
Ga0104830_129049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	541
Ga0104830_130402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0104830_100116	Ga0104830_10011697	F029444	MGFSEQLTGFELEDLMSWAVSNLQRPFREDFSLQKSGINAEKESQIFGRRFVGFDGPKKAAPFFNF*
Ga0104830_102192	Ga0104830_1021925	F074899	MSGRKQWNKQAATSSFLDKKTPQSLIQQGLESSTVVGKDEVGSSNLPSSSNKTL*
Ga0104830_102460	Ga0104830_1024605	F047125	MDVVLLLMVLGVMLSGFWAADALDHMRKEILRQEGKRRGWWS*
Ga0104830_103094	Ga0104830_1030942	F039198	MKLTITEIQGTKYVQIYLTEDELQKKETKDLIKKYKQEKYSMAIFVTGKENYPEILGKIITKQVELNRNVC*
Ga0104830_104786	Ga0104830_1047864	F029444	MEVSEQLTGFELEALLFWTVSNLQCPFREDYSLKKSGIIAEKESQILGCRFVGFDEPKKAAPFFNF*
Ga0104830_105899	Ga0104830_1058991	F026592	AANSILCCLRTASPQGIAALAAQGGVATLTERSDATFSVKQFSSADGE*
Ga0104830_116996	Ga0104830_1169961	F042936	GGGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG
Ga0104830_127777	Ga0104830_1277772	F092227	MNEQKRKRVLRIGCLVLAGVFVLSLLGSIFMMLLF*
Ga0104830_129049	Ga0104830_1290491	F087335	MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPTLNEVGEPELLIGCVTDETVGEVYQRVSNYDFDEPCAGS
Ga0104830_130402	Ga0104830_1304021	F072366	WQKEPPSEGLTVLALQQMVDYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRAKKRFLWQICYYVNAWATFYYIFGREITQENVEQWKKTLFKEAKERYPDSLLFEFILHAAQLDYVWFYRLTDEQRLQIRLEVGEWNLQKNDMDQAVQSDFDDALTWYRDNGRK