3300007292: Human stool microbial communities from NIH, USA - visit 1, subject 765094712 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007292
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052679 | Ga0104320
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 765094712 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 64636666
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F055775	Metagenome	138	N
F068811	Metagenome	124	N
F089054	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0104320_100157	Not Available	84834
Ga0104320_100315	Not Available	45845
Ga0104320_103541	All Organisms → cellular organisms → Bacteria	1576
Ga0104320_103705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1486
Ga0104320_104050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1335

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0104320_100157	Ga0104320_1001571	F089054	MLTKGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELNPYLRYPKQQINPGHKHSTYIRLKLRDILQIPLTDITLIDIISLP*
Ga0104320_100315	Ga0104320_1003152	F055775	MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIHIINADSGEVAAIALN*
Ga0104320_103541	Ga0104320_1035411	F026592	ASTQGIAALAAQGGVATLTERSDETFSVMQLFSADRE*
Ga0104320_103705	Ga0104320_1037051	F026592	TQGIAALAAQGGVATLTERSDETFSVEQFSSADRK*
Ga0104320_104050	Ga0104320_1040503	F068811	MDQDGSEHNICPNREGLCPGKEQHGASGWKKIFRHGKEPLRNKDSASQYCNKKAAVLLILNENVSETLCIFSIDKTNCCRI*