3300007267: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ12 time point

Overview

Basic Information

• IMG/M Taxon OID: 3300007267
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114916 | Gp0124987 | Ga0101447
• Sample Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ12 time point
• Sequencing Status: Permanent Draft
• Sequencing Center: Australian Centre for Ecogenomics
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 82873772
• Sequencing Scaffolds: 23
• Novel Protein Genes: 29
• Associated Families: 28

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → Viruses → unclassified viruses → Virus sp.	3
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1
All Organisms → Viruses → Predicted Viral	6
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Libanvirus → unclassified Libanvirus → Libanvirus sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Alt. (m): N/A
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000613	Metagenome / Metatranscriptome	985	Y
F000754	Metagenome / Metatranscriptome	906	Y
F002125	Metagenome / Metatranscriptome	591	Y
F002192	Metagenome / Metatranscriptome	585	Y
F004819	Metagenome / Metatranscriptome	422	Y
F010091	Metagenome / Metatranscriptome	308	Y
F014026	Metagenome / Metatranscriptome	266	Y
F015078	Metagenome	257	Y
F017636	Metagenome / Metatranscriptome	239	Y
F017822	Metagenome / Metatranscriptome	238	Y
F020902	Metagenome / Metatranscriptome	221	Y
F027652	Metagenome / Metatranscriptome	194	N
F040134	Metagenome / Metatranscriptome	162	Y
F043982	Metagenome / Metatranscriptome	155	Y
F049928	Metagenome	146	N
F054876	Metagenome / Metatranscriptome	139	N
F058963	Metagenome / Metatranscriptome	134	Y
F060051	Metagenome / Metatranscriptome	133	N
F064740	Metagenome / Metatranscriptome	128	Y
F070139	Metagenome / Metatranscriptome	123	N
F073358	Metagenome / Metatranscriptome	120	Y
F074010	Metagenome	120	N
F076159	Metagenome / Metatranscriptome	118	Y
F082635	Metagenome / Metatranscriptome	113	N
F083754	Metagenome / Metatranscriptome	112	Y
F085217	Metagenome / Metatranscriptome	111	N
F091981	Metagenome / Metatranscriptome	107	N
F099340	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101447_100293	Not Available	15087
Ga0101447_102709	Not Available	18176
Ga0101447_103817	All Organisms → Viruses → unclassified viruses → Virus sp.	3413
Ga0101447_104397	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	2467
Ga0101447_104944	All Organisms → Viruses → unclassified viruses → Virus sp.	2273
Ga0101447_105320	Not Available	11306
Ga0101447_107515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	4277
Ga0101447_107965	All Organisms → Viruses → Predicted Viral	2679
Ga0101447_108224	All Organisms → cellular organisms → Bacteria	6153
Ga0101447_111213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3241
Ga0101447_111463	All Organisms → Viruses → Predicted Viral	4087
Ga0101447_112596	Not Available	2077
Ga0101447_113184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	5487
Ga0101447_113195	All Organisms → cellular organisms → Bacteria	8181
Ga0101447_114267	All Organisms → Viruses → Predicted Viral	2604
Ga0101447_115959	All Organisms → cellular organisms → Bacteria	5268
Ga0101447_116245	All Organisms → Viruses → Predicted Viral	2198
Ga0101447_116521	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Libanvirus → unclassified Libanvirus → Libanvirus sp.	5105
Ga0101447_116673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3007
Ga0101447_117209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	7794
Ga0101447_117780	All Organisms → Viruses → Predicted Viral	3175
Ga0101447_118658	All Organisms → Viruses → unclassified viruses → Virus sp.	2290
Ga0101447_119522	All Organisms → Viruses → Predicted Viral	2451

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101447_100293	Ga0101447_10029315	F054876	MENSISLGLIHGLVYGIVPVAPWFVALKRYLLEGKEKGQLAVAGTVVGQVSLLALTFFGWSQVLWVWYYFEPALIILGTMAVVRCALDCWVEQPSSLQATVVPLANKKEGFYYFLVNFGLMFCNPTHFEGSQTLISSIPGNRYFYLVAFTITYTAIIFAFWATVGHRIFGKACSGFGAQQTLNRYRIRRVAVAMVAALFIQFGNCTPEALVIYHFDSLLAYTPFEQLKHFKTRGYTWEPVNNNGSEFTRQSPRSTNKSGILAEQNPRSYIQNKSMWNTETRYDECNQTRERELSNEDWNNEATFHEFNGINQATLHARLIPFNLYMVPNWEKHENKEYLLTLRKIRNEMDEKLLSEGSILEKAALLPFSDNWEYEVDYLTSPRLLEKNAESKASFEDMRKLIRKTKWTSDHLNLGNGNDIEASYGKLHKLPAEVRIPWHYPAIKPSETLNSADEVETLNAQIQSNVNFLANEPDRIQPNVYKRLWEYRNLGKVTPREFDPNRQERLDFEDAMRKKAYLFEYNERSK*
Ga0101447_102470	Ga0101447_1024704	F082635	LASHYASANQNEFKINAEIIDYDPSKKIISLDGAISMTSDDFQISGVTATISMNEEVISIEGNPARINLENPEKIFGEAKQIKYTPAKEISLVGEAVLRTKDGELKSKKILYQLGGSN*
Ga0101447_102709	Ga0101447_10270919	F049928	MYNFVTNREYTGMNYDTLARLSKGSEFAGFHQGKKFFGVKGTDLKGMKAAASVMFVVKKKNADGEEKKSIRYKSVFAKSDFEAAIARNRVLNPDRKVETISE*
Ga0101447_103817	Ga0101447_1038174	F043982	MYNILLFTSLGIAVLSLILCLYACARVGKFIKDTSGLDWAAIANITGDLSTLKKTIQTLNNRMNGMHSPKIQEQELMMQLLKNAPNQVTNGEIKNIGG*
Ga0101447_103817	Ga0101447_1038177	F058963	TTIRRLKNMCDMYDSLRPRATARRRTTGMKRATTTLIKN*
Ga0101447_104397	Ga0101447_1043975	F027652	MFKSLFPKFNKESFAQRLESVPKEFHKYMVEQQRFIRLRQSAQALLKRKKPLLEEMVSKVHAYERKNMDVYVLDDPTLTRDLVLIYRPDKSGANNNVSSLEITRLQKKIERYEEEIIKLQEKIYPRGTEETLSREERRNRIFPKGYYKNEVARRRPTKAEHDMDAMEPSLWKKPDTRTPFQKGEIVLSNLQKAGAEGHPVKWETPTDVDTQPEHIPVTYCDHIEEVTAATEPDHEITDEELVKICHYIRHIRRSTTFYNL*
Ga0101447_104944	Ga0101447_1049444	F043982	MYQILLYSSIILSTFTFFLCLYACARVGNFIKATEELDWSSVANITGDLATLKKTIQTLNNRMNGMHSPKIAEQELLMQLMTKQQNQQVNGKIQGG*
Ga0101447_105320	Ga0101447_10532015	F076159	ESISYPEYTEEDKKRGMNNKDLDFMTKNPMYWAVFLPSLFVIGFGLLPFITMFIFFDKPEFLKP*
Ga0101447_107515	Ga0101447_1075151	F002125	LKRKRLPQIYLSNFQTYLFYTAVIALVGEPSLTSVDLFVSKDTANLTFLRKLPQTIIEVQKVNK*
Ga0101447_107965	Ga0101447_1079653	F004819	MEFYPKDKNPMLDEGSARFHARVLKEDLATLPFVLDTCNRDINIARATNYVTWDHDKEMWCEVDHLMMNFYIQARTSETRDELEDKINRGVVELLKGPRYYEQAKVYCMIDMHYPEDESIYDLVKKPKKDRNPYCVSGNEGDITYHVTLHVQECNATDLAIYDNSNRGDFFDLSGNNLESPMADLERIVNGG*
Ga0101447_108224	Ga0101447_1082243	F017822	LGCAGVPTTRVRPYSWDDPYWKAEIYESKDPESVIVTEGDLYRNYREIATIYTEGRPKNKQEAFSLMRRLLCKFGADAVIKVRKKKNKNYEGIVVLFD*
Ga0101447_108906	Ga0101447_1089065	F083754	MKEKELEAKAAIYRKKWKAKMFLQSGSFFDEQNPKCGWEDNAPVINMPQSTEDVKEYFQKYEKQEAENNPTWWDRIGQKQSKIHQEIYELPENVQIYIAGLNMTIESQVLAPWEGVLSRFFYTQHEWDLFLILDMLKKTSDIYGMDDGPWPLYWFQSRELLFETLHRYPDLIKNRVGRSLPLRIWDQKDFVKEIVAVNFELFKSAPRHIKESRDKVLEAAKVDGRIIGFIKTNMRNDPEVAMTAVNSHADAKNYLFKKTKIELGLI*
Ga0101447_111213	Ga0101447_1112132	F085217	MKFKLFAILFALVFSAGIISHETSHFEMDHGEHAHNEHEVELTEDCSTCLAEQIEYVHDDTVVNPTTISFDFLDAYQPREITLSYNQLSIRAPPRN*
Ga0101447_111463	Ga0101447_1114634	F074010	MIKFSEIKDIHPKGSIWIGENRNKNDKTLLHSQALSFHENFLDVAKDVFTEDKRFADVTEHDWMQPLFDKLMKLLEDVGLGKYYVVQADFNKATDVPSHYRMLYVPCCTPDCIDLDIQTGEKGIFKLPLKEGSFIVMPPNSGIRIIAPPGKMFLGLIMGICKDDE*
Ga0101447_112596	Ga0101447_1125963	F060051	MARATVTEIDKRLSSHEAACEQRWKESYRRLEAIENGIASVNKTIRNTLLFIVTIFLGITGFLFQEIIYQAIG*
Ga0101447_113184	Ga0101447_1131843	F099340	MRTEINNLSFGTFFGSLLSFWYFDNRKAIHHPILLGWARWFPSGSVQVIDFIWKKLSKKIEKRAFFVNFHLSFLLKPQKIRFFGVFGVGY*
Ga0101447_113195	Ga0101447_1131952	F017636	MSRLEKKAQEEDNQKFASKKQGIFIFLPCWIAIGAGFLHIAMGLEATHYLITGSLLALVCGSLGQLRAKIIQQNQTIQILQEKLDEVSG*
Ga0101447_113592	Ga0101447_1135922	F070139	MLFCLRTNQFNRDIEELKIKLEFNKENIDKSDLFSLCPNLKQTRAKSNLSVLVIKNLFFNSIRNTFAIIFLFLLLGAPASLTYKLLDLMIYSDTFKVNAQTKNNLKKYIYFIDYIPVRLTSYCLSIVSNYDRVIDRINSLELSNNPYLSNIEYVNQTGESVFDASKSESDQIIQIQNILARTLIAWLSVIFLLGITGVFI*
Ga0101447_114267	Ga0101447_1142673	F073358	MVDTTNNVICIAEGCRKKLKGKQRKFCSPTCQKRQFARDKYYNKKVDTKPINIERKSDEGDYASVRRGQYYRAFVSEGIAEQVATGDMAVADAASLLGCTSATVSRMLAAYKIDTRNEVAAEEWELSKEAKAALENFSNXXXNIRHRRFSY*
Ga0101447_115959	Ga0101447_1159592	F091981	MTKENHSDAETSQETKKKSGTTGFIKEIGRDVGTDLLHETGTTIKWAVGGALIGAAVLGGLGFWKFGVTGLAIGAIAGGVVGGVVGGWFYFSA*
Ga0101447_116196	Ga0101447_1161963	F000613	MPLVKKRLSVAAGATSDQVLAGTTYEYVDPNTQIIVAAAVDTVGTPSADTTMNFTVNNSEFSKDASVSALVTGEPFGWKGSYVMNDTIVTGAIRNRPVITFTNNTSATRTIDVAVFLSSQP*
Ga0101447_116245	Ga0101447_1162451	F064740	MPLESAADFNSYVDINTGHGVTATFSETSGTLWDSRTTLIDSWTDIDSGFSYSINIIIDQEYFNIEGGTVPVAGYQPRAIVKSTDVPY
Ga0101447_116521	Ga0101447_1165217	F014026	MTLKETYINTLVNSMSMEDLQQYVANDMADFLCYVNDTDLLNEFLIKVEHTTDEQFYNKFVTSLKGGTLLV*
Ga0101447_116673	Ga0101447_1166734	F020902	MQDYFDSEFWDLMYSEYGVTDELDILSEQVTQIITPVPGIIVLITREFYGKES*
Ga0101447_117209	Ga0101447_1172092	F010091	MTTMDIDELLYEAENGKRSAILTRITPEAQPFWDGCEERVKNGTPIKPYVVSRLLKEHFNIKISESAVRHHFENIATHG*
Ga0101447_117780	Ga0101447_11778010	F040134	MRKYRAYNIHMIDNIVKSNWKLQSIEYSGLGNKPHFILMNDSGDFKLVPVEIGIYNLRKLLGLEEE*
Ga0101447_118658	Ga0101447_1186581	F000754	MDFTVNNAEFSKNTSVSALVTGEPFGWNGNYVMNDMVTSGQVRNRPIITFTNGTAATRTIDVAVFIGG*
Ga0101447_118658	Ga0101447_1186583	F002192	MHQVLLYSTFFIAILALFFGLYACGRVAKVQTAVKDLDWDAVANMTGDLATTKRTIQTLNNRINGMHSPKLQEQELMLQLLQNQQTKSNGRMQGG*
Ga0101447_119522	Ga0101447_1195221	F015078	MPKTTEQKFTCNVNYQFDISLEDLRDLFCTMGQGSDYWATDITVGNIETEEDEEGVTYVKSGQDYEYQGCCMWLKELTLDSPITVEDIEEDTHKFKVKDVIKAIENIVSGKTNLNTYDCTQVFEAFKDN