3300007264: Hydrothermal vent microbial communities from Teddy Bear hydrothermal vent, East Pacific Rise - large volume pump, sample 8

Overview

Basic Information

• IMG/M Taxon OID: 3300007264
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116043 | Gp0118655 | Ga0079921
• Sample Name: Hydrothermal vent microbial communities from Teddy Bear hydrothermal vent, East Pacific Rise - large volume pump, sample 8
• Sequencing Status: Permanent Draft
• Sequencing Center: Bigelow Laboratory Single Cell Genomics Center (SCGC)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 42911142
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hydrothermal Vent Microbial Communities From Teddy Bear Hydrothermal Vent, East Pacific Rise
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Fluid → Hydrothermal Vent Microbial Communities From Teddy Bear Hydrothermal Vent, East Pacific Rise

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Teddy Bear Hydrothermal Vent, East Pacific Rise
• Coordinates
  • Lat. (^o): 9.847222
  • Long. (^o): -104.2975
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005608	Metagenome / Metatranscriptome	395	Y
F006198	Metagenome / Metatranscriptome	379	Y
F025922	Metagenome / Metatranscriptome	199	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0079921_1001865	Not Available	830
Ga0079921_1010604	Not Available	532
Ga0079921_1012544	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0079921_1001865	Ga0079921_10018651	F025922	MARNRIIYGSQSVWVNGDVLYRVQTLGSTASFTSEDIFELGSLDIIDAVDDTPNVSVTLNTNDFGDLGTLATLAQLSPAKKAMDATADATNANLQVVDAALAATGTFLHGACLSDFAVTCGSLTGVTLWAPVQDECSIGSLANNIDQTLFMDEVYVNSLEFSYSSGANATENYGAETDNKMWLLNDGRFVNYDKYVLDAGAVGDGYVDLTLAAASDIAVLSTGLG
Ga0079921_1010604	Ga0079921_10106042	F006198	MEVELDVECDNCPATYTMVYDSDDIQSQNQEEHAFHCAFCGILMEPYYNEEEI*
Ga0079921_1012544	Ga0079921_10125443	F005608	MKKATIEVLEEGELIFGSPTVGKYFVRRYEDGEEMGGGFFKTKKEAVTHVREYNKSE*