Basic Information | |
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IMG/M Taxon OID | 3300007210 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0052654 | Ga0103359 |
Sample Name | Human stool microbial communities from NIH, USA - visit 1, subject 764062976 |
Sequencing Status | Permanent Draft |
Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 160776829 |
Sequencing Scaffolds | 20 |
Novel Protein Genes | 20 |
Associated Families | 16 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 4 |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 3 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile | 3 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 4 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 3 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74 | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
Location Information | ||||||||
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Location | USA: Maryland: Natonal Institute of Health | |||||||
Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F026592 | Metagenome / Metatranscriptome | 197 | Y |
F042936 | Metagenome | 157 | N |
F044554 | Metagenome | 154 | N |
F047126 | Metagenome | 150 | N |
F055775 | Metagenome | 138 | N |
F061388 | Metagenome | 132 | N |
F068941 | Metagenome | 124 | N |
F078822 | Metagenome | 116 | N |
F081354 | Metagenome | 114 | Y |
F087334 | Metagenome | 110 | N |
F088914 | Metagenome | 109 | N |
F088920 | Metagenome | 109 | Y |
F088921 | Metagenome | 109 | N |
F089054 | Metagenome | 109 | N |
F090514 | Metagenome | 108 | N |
F099406 | Metagenome | 103 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0103359_100063 | Not Available | 148092 | Open in IMG/M |
Ga0103359_100071 | All Organisms → cellular organisms → Bacteria | 137831 | Open in IMG/M |
Ga0103359_100140 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 99744 | Open in IMG/M |
Ga0103359_100183 | Not Available | 84440 | Open in IMG/M |
Ga0103359_100247 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 68724 | Open in IMG/M |
Ga0103359_100402 | Not Available | 48380 | Open in IMG/M |
Ga0103359_100974 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile | 21434 | Open in IMG/M |
Ga0103359_101104 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 19164 | Open in IMG/M |
Ga0103359_101196 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile | 17652 | Open in IMG/M |
Ga0103359_101853 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 11447 | Open in IMG/M |
Ga0103359_102185 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile | 9679 | Open in IMG/M |
Ga0103359_103197 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 6678 | Open in IMG/M |
Ga0103359_103535 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 6003 | Open in IMG/M |
Ga0103359_105771 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 3804 | Open in IMG/M |
Ga0103359_106078 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 3615 | Open in IMG/M |
Ga0103359_107425 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 2975 | Open in IMG/M |
Ga0103359_109751 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74 | 2289 | Open in IMG/M |
Ga0103359_119148 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1192 | Open in IMG/M |
Ga0103359_122419 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1017 | Open in IMG/M |
Ga0103359_143999 | Not Available | 523 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0103359_100063 | Ga0103359_10006351 | F099406 | MAEVGYNSKFEGLEVDSRLENVVQAAPGTSSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDYVNKKYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSGYLDLSIFSGNSGSLDENSFAKVLDAYNNNITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANADSAVGASEYDIEIQVGTFVVIQDKTYEAMNNMVTLSNTILSYLNFMAMPPKVVTTLANLPKGAHNIIANVASATNLSMTVSSEHVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVVIPKNSFIELSIWYINDKLVIRVGEQA* |
Ga0103359_100071 | Ga0103359_1000719 | F068941 | MIGGTYAYYRWKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFNLYATGKNATLNG* |
Ga0103359_100140 | Ga0103359_1001401 | F068941 | KISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVTKGNFKAYNASSNASGITYASSGVTTLILFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFNLYATGKNATLNG* |
Ga0103359_100183 | Ga0103359_10018375 | F089054 | MLTSGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELNTYLRYPNQEINPGHKHSTYIRLKLREILEVNLTDITIIDIISLP* |
Ga0103359_100247 | Ga0103359_10024727 | F068941 | MENNKGLIIGIIGLIIVMIGGSNVTGTLTPVDSKEEGIKKDITVKANEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFDLYATGKNATLNG* |
Ga0103359_100402 | Ga0103359_10040216 | F055775 | MAQIAQQDNLVIEVATTATALDDDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGKSPKYTIDIIKADSGAVEAIELN* |
Ga0103359_100974 | Ga0103359_10097415 | F088914 | VGRILPVYSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENRKNPGEFIAFFAWYAAKALEMDVK* |
Ga0103359_101104 | Ga0103359_10110411 | F042936 | VWKTKEGIMNTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG* |
Ga0103359_101196 | Ga0103359_1011963 | F044554 | VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENKIAHLQGQYRFNSHRYCFSAFLVL* |
Ga0103359_101853 | Ga0103359_10185311 | F087334 | MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAASLFEYREKHQ* |
Ga0103359_102185 | Ga0103359_1021858 | F047126 | VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESSCILCSLLRYFHILSKKLQKTC* |
Ga0103359_103197 | Ga0103359_1031971 | F078822 | FLSLPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL* |
Ga0103359_103535 | Ga0103359_1035357 | F088920 | VSANLHHYPAFEAGLILHLILHLILHFSQKAAIFAPKRAFSFLFVPTLFFAGLSVLSPQTSLKISGQASLY* |
Ga0103359_105771 | Ga0103359_1057711 | F081354 | LVRENQQSSAHNFVKDFSSFLPESRRRSPLKKGAATENPLEYGKTEVQILFEPLPTTISSMELPKNFENKKLPNTLRRLAFSPFHL* |
Ga0103359_106078 | Ga0103359_1060783 | F090514 | MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGANWFVILLTIVPAGSRTRAGSSLPLIPASNIFLKQTPRRGLPLAWNAGADSFLFCG* |
Ga0103359_107425 | Ga0103359_1074252 | F061388 | MTDYLIARSGGYGRYSAYSELFQGFDSSGNAILHHSASGGLLGRTAKKELEGHLSRIRRYDPNMTRDQAADRLISEAMGKYSMRDRSDISDMFEGAGIGKAYPLGSGHGTNYWAGRDSGKEIFAEITSAEAAHPGSLMAIKEYFPKTYKVYQDMLKARKKK* |
Ga0103359_109751 | Ga0103359_1097514 | F088921 | LGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKLAMIRYKMWSK* |
Ga0103359_119148 | Ga0103359_1191481 | F026592 | WTASLQGIAALAAQGGVATLTERSNATFSVKQFLSADRE* |
Ga0103359_122419 | Ga0103359_1224194 | F026592 | ASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE* |
Ga0103359_143999 | Ga0103359_1439992 | F088920 | HHFIFLFLAFFSFVSANLHHYPAFWAGLILHLILHFSQKVAIFALKRVILLLFVPTLFFAGLSVFSPQTSSKISGQTSLHQPWLSPYCLFKD* |
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