NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007210

3300007210: Human stool microbial communities from NIH, USA - visit 1, subject 764062976



Overview

Basic Information
IMG/M Taxon OID3300007210 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0063646 | Gp0052654 | Ga0103359
Sample NameHuman stool microbial communities from NIH, USA - visit 1, subject 764062976
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size160776829
Sequencing Scaffolds20
Novel Protein Genes20
Associated Families16

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026592Metagenome / Metatranscriptome197Y
F042936Metagenome157N
F044554Metagenome154N
F047126Metagenome150N
F055775Metagenome138N
F061388Metagenome132N
F068941Metagenome124N
F078822Metagenome116N
F081354Metagenome114Y
F087334Metagenome110N
F088914Metagenome109N
F088920Metagenome109Y
F088921Metagenome109N
F089054Metagenome109N
F090514Metagenome108N
F099406Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103359_100063Not Available148092Open in IMG/M
Ga0103359_100071All Organisms → cellular organisms → Bacteria137831Open in IMG/M
Ga0103359_100140All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes99744Open in IMG/M
Ga0103359_100183Not Available84440Open in IMG/M
Ga0103359_100247All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes68724Open in IMG/M
Ga0103359_100402Not Available48380Open in IMG/M
Ga0103359_100974All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile21434Open in IMG/M
Ga0103359_101104All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales19164Open in IMG/M
Ga0103359_101196All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile17652Open in IMG/M
Ga0103359_101853All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales11447Open in IMG/M
Ga0103359_102185All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile9679Open in IMG/M
Ga0103359_103197All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae6678Open in IMG/M
Ga0103359_103535All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae6003Open in IMG/M
Ga0103359_105771All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae3804Open in IMG/M
Ga0103359_106078All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3615Open in IMG/M
Ga0103359_107425All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2975Open in IMG/M
Ga0103359_109751All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/742289Open in IMG/M
Ga0103359_119148All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1192Open in IMG/M
Ga0103359_122419All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1017Open in IMG/M
Ga0103359_143999Not Available523Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103359_100063Ga0103359_10006351F099406MAEVGYNSKFEGLEVDSRLENVVQAAPGTSSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDYVNKKYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSGYLDLSIFSGNSGSLDENSFAKVLDAYNNNITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANADSAVGASEYDIEIQVGTFVVIQDKTYEAMNNMVTLSNTILSYLNFMAMPPKVVTTLANLPKGAHNIIANVASATNLSMTVSSEHVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVVIPKNSFIELSIWYINDKLVIRVGEQA*
Ga0103359_100071Ga0103359_1000719F068941MIGGTYAYYRWKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFNLYATGKNATLNG*
Ga0103359_100140Ga0103359_1001401F068941KISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVTKGNFKAYNASSNASGITYASSGVTTLILFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFNLYATGKNATLNG*
Ga0103359_100183Ga0103359_10018375F089054MLTSGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELNTYLRYPNQEINPGHKHSTYIRLKLREILEVNLTDITIIDIISLP*
Ga0103359_100247Ga0103359_10024727F068941MENNKGLIIGIIGLIIVMIGGSNVTGTLTPVDSKEEGIKKDITVKANEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFDLYATGKNATLNG*
Ga0103359_100402Ga0103359_10040216F055775MAQIAQQDNLVIEVATTATALDDDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGKSPKYTIDIIKADSGAVEAIELN*
Ga0103359_100974Ga0103359_10097415F088914VGRILPVYSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENRKNPGEFIAFFAWYAAKALEMDVK*
Ga0103359_101104Ga0103359_10110411F042936VWKTKEGIMNTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG*
Ga0103359_101196Ga0103359_1011963F044554VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENKIAHLQGQYRFNSHRYCFSAFLVL*
Ga0103359_101853Ga0103359_10185311F087334MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAASLFEYREKHQ*
Ga0103359_102185Ga0103359_1021858F047126VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESSCILCSLLRYFHILSKKLQKTC*
Ga0103359_103197Ga0103359_1031971F078822FLSLPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL*
Ga0103359_103535Ga0103359_1035357F088920VSANLHHYPAFEAGLILHLILHLILHFSQKAAIFAPKRAFSFLFVPTLFFAGLSVLSPQTSLKISGQASLY*
Ga0103359_105771Ga0103359_1057711F081354LVRENQQSSAHNFVKDFSSFLPESRRRSPLKKGAATENPLEYGKTEVQILFEPLPTTISSMELPKNFENKKLPNTLRRLAFSPFHL*
Ga0103359_106078Ga0103359_1060783F090514MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGANWFVILLTIVPAGSRTRAGSSLPLIPASNIFLKQTPRRGLPLAWNAGADSFLFCG*
Ga0103359_107425Ga0103359_1074252F061388MTDYLIARSGGYGRYSAYSELFQGFDSSGNAILHHSASGGLLGRTAKKELEGHLSRIRRYDPNMTRDQAADRLISEAMGKYSMRDRSDISDMFEGAGIGKAYPLGSGHGTNYWAGRDSGKEIFAEITSAEAAHPGSLMAIKEYFPKTYKVYQDMLKARKKK*
Ga0103359_109751Ga0103359_1097514F088921LGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKLAMIRYKMWSK*
Ga0103359_119148Ga0103359_1191481F026592WTASLQGIAALAAQGGVATLTERSNATFSVKQFLSADRE*
Ga0103359_122419Ga0103359_1224194F026592ASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE*
Ga0103359_143999Ga0103359_1439992F088920HHFIFLFLAFFSFVSANLHHYPAFWAGLILHLILHFSQKVAIFALKRVILLLFVPTLFFAGLSVFSPQTSSKISGQTSLHQPWLSPYCLFKD*

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