3300007175: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S12 NT20 metaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300007175
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0119848 | Ga0079283
• Sample Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S12 NT20 metaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 52656072
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001926	Metagenome / Metatranscriptome	616	Y
F036277	Metagenome / Metatranscriptome	170	Y
F053827	Metatranscriptome	140	N
F056191	Metagenome / Metatranscriptome	138	Y
F090441	Metatranscriptome	108	N
F098751	Metatranscriptome	103	N
F102625	Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0079283_1007453	Not Available	633
Ga0079283_1014872	Not Available	534
Ga0079283_1015587	Not Available	617
Ga0079283_1015667	Not Available	999
Ga0079283_1015971	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	672
Ga0079283_1016113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201	544
Ga0079283_1117639	Not Available	517
Ga0079283_1172988	Not Available	646

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0079283_1007453	Ga0079283_10074531	F053827	MSILSTLFVVVCSIQLIFGQRYVPPPGYERRYGAKDVNEWPSKKVYGEKTPRPTKWAPPTYEKPTPQPTKYVEEPDSYKGRTYSADEIYTELEKILLAEDPKAAIEEQLIIHGEGEEEGDDRLFSYKIPDGGRCTTPIFGFVNTRCSGGCCENGRCASKKKDWVPFDYGSYHSQSDSQG*
Ga0079283_1008480	Ga0079283_10084801	F102625	MEAETASLAAGVEAAVHAQPVQLLQAAAVDLQDLEERSDVPDVEEGNLAELSAPLHGDADGVEEGENHVVEVLAAVEACERAFPHAGDGVGTLGLGEDILEGDLQMVVDVVWVTVDHVELSARDCCNGISHGCCWC*
Ga0079283_1014872	Ga0079283_10148721	F090441	KGEVWELATLSFLDSLALGAPITRRVIIGCQFPDAASYRKNDSDMFRPHSGT*
Ga0079283_1015587	Ga0079283_10155871	F056191	MCNARVRHALTAEMSKTFPSGGSMHARVKLEGIDGRAPQER
Ga0079283_1015667	Ga0079283_10156671	F056191	CNARVRHALTAEMSKTFPSGGSMHARVKLEGIDGRAPQERGACGLI*
Ga0079283_1015971	Ga0079283_10159712	F001926	VRHEDIPETNNPRIRFPVLEGDKLMKEVLNGGYNVHPVPPPNSEIKERSVRRYERKRIKIERLLTLGYTTSGDP*
Ga0079283_1016113	Ga0079283_10161132	F036277	LCSNPFVDKSTQYELHSPNKNKIDLSYLGSASLNS*
Ga0079283_1117639	Ga0079283_11176391	F098751	QLNLIDGFSHSQVEINLFHDTGIVLITGIFIFVAILGGSLVFNKLRDRKMLEDQALETI*
Ga0079283_1172988	Ga0079283_11729881	F090441	PDSLALGALITRRVIVGCQFPDAASNRKNDCDTFRFHSGT*