3300007156: Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_top_diel_T=5 metaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300007156
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067861 | Gp0123755 | Ga0099837
• Sample Name: Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_top_diel_T=5 metaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 13616744
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026924	Metagenome / Metatranscriptome	196	Y
F027904	Metagenome / Metatranscriptome	193	N
F067921	Metagenome / Metatranscriptome	125	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0099837_101100	All Organisms → Viruses → Predicted Viral	1115
Ga0099837_103950	Not Available	1509
Ga0099837_129335	Not Available	590
Ga0099837_132685	All Organisms → Viruses → Predicted Viral	1857

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099837_101100	Ga0099837_1011003	F027904	MVVKMEKYNPPEYDLFNLNNGSTLVGTSPVTLLYEGQPNATVVVPPDLTLRVKQVIIQNTTSSVITVQLQAVTTQTGLPSPVNKTPPIPVPASSAVTLDEDEWSINVKTGYSLAAVSSAANSANVFVKAYFVKGTGSPI*
Ga0099837_103950	Ga0099837_1039502	F067921	MESFERVDDRLLRNGQYLLVSYSGAKNPAQAMFTGFRVVKHNVTTLYYNFATEVPNFLPMAPYGTSPGPTNSPPYIDNFSFSLQEVKNVTDMFDITKTGDAYQVFYGISPSYLRVMNKVQRQFVSVLEQNIYPSNSFVEMGVDGFQSPLNNPSAKTEFIVFVNLTYNVTLMNTATIPIMPAFNFVINRMTLEPLGQAELKKAILAGFPIRSLGAVDSSIMISPDNYPGLVTLSYREIYGG
Ga0099837_103950	Ga0099837_1039503	F027904	MEKYEPPEYDLFNLNNGSTAIGTTPAPLLYEGQANAAVIVPPDLTLRVKQVIIQNATTSLITVQLLAVTTVSGAPTPVAKTPPIPVPASSAVTLDEDEWSISVKSGYSLAAV
Ga0099837_129335	Ga0099837_1293352	F026924	MSVGKVCWREHYKFEASKIVHLGRHGFHIPVIVYGHDPDPEKAQEDLCINMVGIYEPIGSFRENQLILPPKKGERV*
Ga0099837_132685	Ga0099837_1326853	F027904	VQCKYEPPTYDLFNLNNGSTLVGQSPVTLLYEGQPNATVYAPPDLTLRAKQIIIQNATTSPITVQLLAVAAPNTSLPGPIPKTPPIPVNAGSAVTLSEEEWGIAVRSGYGLAAVSSAANSANVFVKCYFTKGTGMPV*