3300007145: Human subgingival plaque microbial communities from NIH, USA - visit 1, subject 763435843

Overview

Basic Information

• IMG/M Taxon OID: 3300007145
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052646 | Ga0103286
• Sample Name: Human subgingival plaque microbial communities from NIH, USA - visit 1, subject 763435843
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 67262502
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces gerencseriae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F046432	Metagenome	151	Y
F049707	Metagenome	146	N
F095632	Metagenome	105	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103286_100530	All Organisms → Viruses	7254
Ga0103286_103035	All Organisms → cellular organisms → Bacteria	2900
Ga0103286_104492	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2274
Ga0103286_117740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces gerencseriae	829

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103286_100530	Ga0103286_1005303	F105377	MRDFDKLPLLTPEEAFERAMEMGWNRPLFDHGYRVRGLNDWRAIETLLRQYDVEDAVIASFGLKRFEEILDAFAMLHERGWRLWQTSANVYVDGELRAVPAIRAHYRGD*
Ga0103286_103035	Ga0103286_1030351	F033081	MYPPDLMVVHRPRKGAMAWLFNRVMPTDNRPTFVWPRLVVAIEDTRHFDRRELSVIAVVLIVMTIATIKVLLFIPGLDSSVVDLLTRGFATFLPLTWATGAAWVAGAVGVFLIGDFTNYTKKQKSLHGLKTTRCGVYDTLLLFALLEEQAFRSGSEKWSWRERARASVCFGLLHITNIWYSLAAGAALSATGFGFLLVYLWYYRKYRSQVVATAAATTLHTLYNVIALSLIAVAAVAYLVINIAKML*
Ga0103286_104492	Ga0103286_1044926	F049707	VSEYRSPHNDGHDPYILIWEYGSEVQKSEFVERWAEYEPDTGWTVWYFRLDDGRIMTFRTLEWEQKDDVNHLTTIYFTPKQKENS*
Ga0103286_108047	Ga0103286_1080471	F046432	MQMSESRLGEVISKFQMPQDRYLIEQEGSFGRGEFFWVIKNQTTHQKYLLMNTYSHHGVESELECYREEGFSNLEAIQRRIQTLV*
Ga0103286_117740	Ga0103286_1177402	F095632	KVVNFVASTTASITAGAVVSALCPPAGVALTVVYSLGSGVLGSYVGDKAGRQYAENFAETIDSMKTDSNN*