3300007134: Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', co6ic19

Overview

Basic Information

• IMG/M Taxon OID: 3300007134
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117787 | Gp0124800 | Ga0101663
• Sample Name: Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', co6ic19
• Sequencing Status: Finished
• Sequencing Center: University of New South Wales
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 133445315
• Sequencing Scaffolds: 25
• Novel Protein Genes: 28
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
Not Available	16
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	1
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium oryzae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Clitellata → Hirudinea → Rhynchobdellida → Glossiphoniidae → Helobdella → Helobdella robusta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
• Type: Host-Associated
• Taxonomy: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → C. Singaporensis (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Upa-Upasina 'control' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.828217
  • Long. (^o): 150.820517
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008797	Metagenome	328	Y
F017657	Metagenome	239	Y
F022311	Metagenome	215	Y
F024330	Metagenome	206	Y
F033840	Metagenome	176	Y
F038198	Metagenome	166	Y
F043451	Metagenome	156	N
F051113	Metagenome / Metatranscriptome	144	Y
F051267	Metagenome	144	N
F058078	Metagenome	135	Y
F067211	Metagenome / Metatranscriptome	126	N
F073669	Metagenome	120	N
F082551	Metagenome	113	Y
F082820	Metagenome	113	N
F084109	Metagenome	112	N
F085224	Metagenome	111	N
F097211	Metagenome / Metatranscriptome	104	Y
F101313	Metagenome / Metatranscriptome	102	N
F104990	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101663_1008721	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1875
Ga0101663_1020406	Not Available	1202
Ga0101663_1024489	Not Available	1087
Ga0101663_1025814	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1057
Ga0101663_1033837	Not Available	911
Ga0101663_1038219	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.	851
Ga0101663_1046371	All Organisms → Viruses	763
Ga0101663_1047210	Not Available	755
Ga0101663_1048309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	745
Ga0101663_1055484	Not Available	684
Ga0101663_1057797	Not Available	667
Ga0101663_1059371	Not Available	656
Ga0101663_1062367	All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl	636
Ga0101663_1063287	Not Available	630
Ga0101663_1064944	Not Available	619
Ga0101663_1065947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium oryzae	613
Ga0101663_1068529	Not Available	597
Ga0101663_1069302	All Organisms → cellular organisms → Bacteria	593
Ga0101663_1070520	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Clitellata → Hirudinea → Rhynchobdellida → Glossiphoniidae → Helobdella → Helobdella robusta	586
Ga0101663_1070805	Not Available	584
Ga0101663_1071438	Not Available	581
Ga0101663_1079390	Not Available	540
Ga0101663_1080647	Not Available	535
Ga0101663_1081176	Not Available	532
Ga0101663_1081993	Not Available	528

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101663_1008721	Ga0101663_10087212	F051267	MAICWINYTNAEAIFTYANHEQEMAETEFRLDVSADESEVISKLIKSYFDMDNAEDREMISDIVKVSFCFSDTEYPQKLKKKEAEKFWELPTMKAFLERNGKYYFDEEQRDDVETSIKELLDCWKEEIV*
Ga0101663_1020406	Ga0101663_10204062	F101313	MTSALKREFKVGDEVCHTNKFSTGNNFQRKRKGVVLGIERRPVKDGKLRTYIEVLWNTSSVPCFHASHALLHLSEREGAIKEASKCIAN*
Ga0101663_1020406	Ga0101663_10204064	F024330	SNPNSRPKKVTKYAYVIKNQVEWDRMHKRYVVLEGKGKQETQPIPLLHKDNRKAYEDACDVCGWNYKDKEARTLYVTDGTYISPTAIKRMRELS*
Ga0101663_1024489	Ga0101663_10244892	F043451	MPNIQPWLYPPHPSPDRVAYTPTRSAHILEYQEEMIDAEGNVYWKTVDSTTLGGATSVKEFLEQIKDFYESKSCREDKML*
Ga0101663_1025814	Ga0101663_10258142	F067211	MSFLEPVIASLLGAAVTALAVFLKKNMTAVALLKYGPLVQKAYDIIDPVLDKNLSNWDGSKVDKAFELAVESVADGELSATEIKKLAVHMAQSWLPGAAAQKVRLLEQNGMPLEQRKAAEDITAKVNTAS*
Ga0101663_1033837	Ga0101663_10338372	F038198	MAIEKVTLKNVRVTVNFDIDLDTLKRYLETKERDFDDVMAIYDMICTQSDRLNEQGEPENIRAYFDIDPETLNLVEDEVRKSIKFKTSFHPHLKRIK*
Ga0101663_1038219	Ga0101663_10382192	F073669	MIEPNMKLLEAMRTEANLCYERGDDEDGNALVKSIFDQIFPGLVEEAKRNPTIIYTLIIHSNTEKDEMKANHYRSILKYLKDNGVKF*
Ga0101663_1041090	Ga0101663_10410901	F104990	MNSKERKWTIDRLDDSDWQRMKEHMDKKFPNMKLPDVESFKELGRLYGLATEYHEKKLN*
Ga0101663_1046371	Ga0101663_10463712	F058078	MEYEIPNEGGTYILNPKTGKRKLVQQTKQAEIPTEVTTDGTTDKEESNSN*
Ga0101663_1047210	Ga0101663_10472102	F085224	RPARLRHPRAHFRDYVTGISEAFNNFSYRDLLRFKAVVMFPYSVFSGMMLELIQMGVPMFYPSKSLLKRWDEKYGMMFHRTNAFRERRAGGFSNIAYGANSAPDPNDSVNHEALHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIRRDLAKSNSTPA*
Ga0101663_1048309	Ga0101663_10483093	F008797	YFEFFLACKLGMTIGRLRTELSDAGLVHFVALYEVKEEQEEKAMNLVLK*
Ga0101663_1055484	Ga0101663_10554842	F085224	QMGVPMFYPSKSLLKRWDESYGMMFHRTNAFGARRAGGLSNIAYGKGAMPDPNDGVNREALHYWLEKSEFYNWDVRYFDSPADLHEKLKAADFEAMHRDVLKTRARMDKIRDERWAEIQRDLTKFNSTPA*
Ga0101663_1057797	Ga0101663_10577972	F043451	MITGKCILVETMSNIQPWLYPNDPFSVDRVVYTPTLSAHILEYQEEMIDAEGNVYWKTVDSTTFGGSTSVKEFLEQMKDFYETKSCRKDKMQS*
Ga0101663_1059371	Ga0101663_10593712	F033840	MSVFDYKLNRRQQLVKKGEMIDNNIDFSGRTNTDFTNKFVAKMRDTNNLYTRESPGQFDDQKAEVVRKNLLTQADDRGQFNDPSQQVRSDAFLAKFRNSVLVNEEEKPSRQGILQYMQGNPKDPPVNGQFPTDGVKVS*
Ga0101663_1062367	Ga0101663_10623672	F051113	KGLLMAGADRAIRELMFIFKDDPIETPLEEATMSVWARMQLEE*
Ga0101663_1063287	Ga0101663_10632871	F085224	FSYQDLLRFKAIVMFPYSIWSGVMLELLEMGVPMFYPSKILLKRWHERYEMVYQRSSGGRRSVGGFSNIAYGADSAPDPNDGVNREALHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDARWAEIKRDLTKTG*
Ga0101663_1064944	Ga0101663_10649442	F082551	MAQSYPIWIDVSGDNYKKDKSFGSRDHVSLDIKVGSSKTYSNDLARVSIHMREDEAGNRTFARALDGLVVRSAVMTKEKKFYHRDPRKASA*
Ga0101663_1065947	Ga0101663_10659471	F085224	VMFPYSVWSGVMVELLQMGVPMFYPSKRLLKRWDESYGMMFHRTNAFGERRAGEFSNIAYGKGAMPDPNDSVNREALHYWLEKSEWYNWNVRYFDSPADLHEKLKAADFEAMHRDVLKTRARMDKIRDERWAEIRRDLAKTSSTPA*
Ga0101663_1068529	Ga0101663_10685292	F085224	QMGVPMFYPSKSLLKRWDESYGMMFHRTNAFGERRAGGFSNIAYGKGAMPDPNDGVNREALHYWLEKSEWYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIKRDLTKTG*
Ga0101663_1069302	Ga0101663_10693021	F097211	GEGYPTNNTVVSGGFAVSAVGADSRIPNGTVASTNIIDSSLLEKTTAQTQWKLFATTDASPVVQGSGVYDPRAANNFLSGDNKALAICEVCWILPDSPPERQDVALQPDGLTESSVYTSTSPS*
Ga0101663_1070520	Ga0101663_10705201	F085224	SIWSGVMLELLEMGVPVFYPSKILLKRWHERYGMVYQRSSGGRRSAGGFSNIAYGKDSAPDPNDSVNPEALHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIKRDLTKTSSTPA*
Ga0101663_1070805	Ga0101663_10708051	F017657	MEDNRKEALNKATKAKQKMAVEAEMMKQLQPTVPEVTAANIDMQPGINPNPKPEGPVINPNVFNPGNIYPGISGNTKLAATWNPMMDPAAG*
Ga0101663_1070805	Ga0101663_10708052	F082820	YLKMRKLIDGLAIASFVLSLTTVGAIGFGYLALTNKTNQEKIKNYAIGEAQKLLKDQLTKSIPSLPSATGDVVPAKPSLPKF*
Ga0101663_1071438	Ga0101663_10714382	F085224	SIWSGVMLELLEMGVPVFYPSKILLKRWHERYEMVYQRSSGGRRSAGGFSNIAYGKDLMPDPNDSVNREALHYWLDKAEWYNWDVRYFDSPADLHEQLKAADFEALHRDVLKTRARMDKIRDERWAEIQRDLTKTSSTPA*
Ga0101663_1079390	Ga0101663_10793902	F084109	THTSLPVEMSKRDYEARIRELLEQCEIIKMPYEVTKEGQFNSHLDDFIYNQAIADEIEDVLNHCVWKDDGKIFFQLTSLERYFKKIQFKEFSSTQMGSLIRDRGGDSKKVRINPNTIKNLFYIPDPKPKQEAKLNVPQVKSDVPF*
Ga0101663_1080647	Ga0101663_10806471	F085224	LELIEMGVPMFYPSKRLLKRWDERYGMMFHRTNAFGERRAGGFSNVAYGKGSMPDPNDSVNREALHYWLEKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWVEIRRDLSKSNSKPA*
Ga0101663_1081176	Ga0101663_10811761	F022311	MPKSITDSSYDPIYDQIRGILGEHFENYCFIVMNEQGELFYDYNHLPAGRMLLHEMQKELSEGNINFEWEFENDPDDLEEEE*
Ga0101663_1081993	Ga0101663_10819931	F085224	PYSIWSGVMLELIEMGVPMFYPSKSLLKRWDESYGMMFHRTHEFGSGRSAGGFSNIAYGADSAPDPNDSVNPDALHYWLDKSEFYNWDVRYFDSPADLHEQLKQADFEAMHRDVLKTRARMDKIRDARWAEIRRDLTKTSSTPA*