3300007126: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158337416

Overview

Basic Information

• IMG/M Taxon OID: 3300007126
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052616 | Ga0102717
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158337416
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 141393750
• Sequencing Scaffolds: 20
• Novel Protein Genes: 24
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	5
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 278	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040685	Metagenome	161	N
F041827	Metagenome	159	Y
F043990	Metagenome	155	N
F047127	Metagenome	150	N
F049707	Metagenome	146	N
F051212	Metagenome	144	N
F051213	Metagenome	144	N
F057446	Metagenome	136	N
F059076	Metagenome	134	N
F061927	Metagenome	131	N
F063777	Metagenome	129	N
F064818	Metagenome	128	N
F066860	Metagenome	126	N
F067846	Metagenome	125	Y
F071328	Metagenome	122	N
F076191	Metagenome	118	N
F080165	Metagenome	115	N
F090516	Metagenome	108	N
F095630	Metagenome	105	N
F095632	Metagenome	105	N
F097525	Metagenome	104	N
F097526	Metagenome	104	Y
F101359	Metagenome	102	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102717_100003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	340875
Ga0102717_100073	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	95175
Ga0102717_100251	All Organisms → cellular organisms → Bacteria	43496
Ga0102717_100311	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	38168
Ga0102717_100761	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	21487
Ga0102717_100913	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	19010
Ga0102717_101097	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 278	16585
Ga0102717_101146	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	16024
Ga0102717_101471	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	13124
Ga0102717_101848	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	10850
Ga0102717_102026	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	10091
Ga0102717_102137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae	9699
Ga0102717_102359	Not Available	8912
Ga0102717_102361	All Organisms → cellular organisms → Bacteria	8909
Ga0102717_104616	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	4828
Ga0102717_105260	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	4282
Ga0102717_105543	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	4095
Ga0102717_106321	All Organisms → cellular organisms → Bacteria	3638
Ga0102717_109039	All Organisms → cellular organisms → Bacteria	2607
Ga0102717_110446	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2271

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102717_100003	Ga0102717_100003138	F067846	MSIIADWERKTFNDYDRRCCAEDAYNEAVEREIECIEEDISNGDTEELWKFSEKAFEDDEFVKAIALGNDFEEMRIKILTAMAEDRLGQLEKDYRNGYILND*
Ga0102717_100073	Ga0102717_10007379	F105380	MTIVELDTSQYVKQGRIFKKFDSNLLDSYMEGRQTQYNINLADLDDQISDGIVYADRSGKMIYKFGAKKIIQTAITKDLTITGLDDEFKMDYYSFWVPDIYLISFKSFNPDGGLYLAYHKKDEKHICLTNIWPDSRNQDDTYFPNGKRLVTKSICTGRMMDDIDSAEYSAWKNDPVTRASQYINKFINARGNADLDFVNSTLRRKVPNHNTKKFAEFLGSITKEQENVNTYEEFIEWTKTTEWFK*
Ga0102717_100251	Ga0102717_10025127	F049707	VSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWAVWYFRLVDGGIMTFSAREWEQKDDVNHLTTIWMKPSLYDIERKKN*
Ga0102717_100251	Ga0102717_10025148	F095632	MSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGIGSSVLGTYVGDKAGRQYAETLAETIDSMKTPSTN*
Ga0102717_100311	Ga0102717_10031110	F040685	MKKLLFKLFFALAFASISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFNTKPLMGQKEDLPKEISLPNTPKNWEAFTKKINLDKFKKLRDGPSQQAFDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKSIYE*
Ga0102717_100311	Ga0102717_10031111	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPETQKTSISEKQNAEKIERIIYSQTGGDTGGKGVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKFSQLNNHLNLEK*
Ga0102717_100311	Ga0102717_10031113	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDKKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIKEILEKYNSK*
Ga0102717_100311	Ga0102717_10031123	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYKETVK*
Ga0102717_100761	Ga0102717_1007616	F063777	MKLLLYLCIPFLLIFGILFLIGWGIYSGINSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHFNDDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLEFDSETKTINGYNNKEQIEIAISE*
Ga0102717_100913	Ga0102717_10091316	F066860	MTTKKQKLQKQQTIDTWIVIALWASAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQVKKRHASKDYLTTIVRVSFIVMSISLFICGLAMPDFSDIETFSTLSVYTNNAISFETSKAIAIISGFVVVLSLFVAVTFGIAEDREETTEDVAI*
Ga0102717_101097	Ga0102717_1010979	F051213	MHRYSCLAKQIHPMNLYKILGALILALSFVFTSCDWVANEPTIEGDRYKTFDSSAQRKSFRVVNASGKRYNHKVDWDIVGIKQLWVKTYLTKKVDTLSNGDLKISYDWVSFTVKERKSVIEVEVQKNETGQDRSVFFVTSNNRTQSHRPNIVVTQKAK*
Ga0102717_101146	Ga0102717_1011465	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGVGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYFDLDNDAGTGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDRLDVKIDIKPIPEEEKVVPMQEHLAKFLAFCGVKQEVIDENKERLLKALEEYTPDEYEGISEAMAEMMKYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLYPYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK*
Ga0102717_101471	Ga0102717_10147110	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISANQEKPAEIGFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVASFKRE*
Ga0102717_101848	Ga0102717_10184810	F059076	MTNRILLLGLLLGGASINAQTINETNAAGKTGQKVGINTTIPTRTLTIKNSTPNDGKPVLRLVDAPIYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYSFKMPNPTGTNNIVMLRGGINTPSVKHGTDNYGVTTAPATVLLTKTGSNWGIYADYPNIGSYQFPSGSTAIGQLVDGTWVITLLVGKRDAVNFTEIKFDQNGQAEGIGPSNTTYTTQLQNFLKKLE*
Ga0102717_102026	Ga0102717_1020268	F057446	MNSISFGKTTITSYPEYFEITDNKKTSKLLYLSASFVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWTSIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0102717_102137	Ga0102717_10213712	F097526	MTADNTTAIAPYTQDGYRLLCERLDDDTVAALLHAHIRAFAADGNRQLLKRLTDAMRIAGEMEKAGRNGHPDPAEQARRERWDNQFRELQQQARMAHCEIVNADNAAVSRLTAQCEKNGSCDTAIPLPRDDYGFAAALRDFPLNEHQTALLWRMAVLTIAEITDATPSLVAHYLNGIGGEHLGRALAGKTVYPVTVVSNLAWLLHEQHKSGQLQRDLRHIAAREPENAAVMPAVALEPVVTLQAAEQPEITIHNPTTGATL*
Ga0102717_102359	Ga0102717_1023595	F043990	LELSLLGIVVYANHKIEKSWIEGEFGVNMSNMNIDEKHRKEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPEQFLNTTNGYYKYVVDENDDWNFGILIVDTARKEICIYNQIF*
Ga0102717_102361	Ga0102717_1023618	F095630	MRYSPLYKTSKDNGLLAHVYEHLLAQYILKYLQDRGFFISSDIILTAKTYGDTCYMDVELYNPAAPNAYNEALQAFDKHTIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRVQSSDWRQQSEMTYRKSYDKSSVNTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIVMQTVALNFLVAVRENYTVYDRGDQWSEASLSVGYRIFLGLSKEDKQITSQLKHEFTAYIQYLLKSPFCNNLQKALLRCSRNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI*
Ga0102717_104616	Ga0102717_1046162	F071328	MSQKHWTFTNIIRYIEEYERNPLLIERMKWKSIPEGECIVEFVKLCEHLVLERTIDPKNHQTTAIYLRYSQQLLLKKKRAIRRLGVEKKNVSAILRLCGIHYREYGDDEHRVFFLDTDVNIYFCKHYQLPIYIMQRIEFSNKEYRSFLLKVLPVGKGEW*
Ga0102717_105260	Ga0102717_1052606	F061927	MKNPIFILSAMLILGACSSESAKKAYNDSFRKIFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIDSCIGE*
Ga0102717_105543	Ga0102717_1055433	F041827	MKHFLSALALGCLLLSCNRDIENNENNETPAPPKEERLVLASLYEFGSNVRFQYKNGNEINRMAMDGPHGEASMDFEYDTYGRIVKERRFHHRSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSIEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPALVVEFYIRPFTYELPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYDKGKSHDNDYLEIEEVNIYEKSHNDPTHDNYLSSASPARFYTKEK*
Ga0102717_106321	Ga0102717_1063212	F064818	MNKDEFLKELIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNRDVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKIFPSCFFNTALVALLIIEKNLLSLDDERVQSLFEYDNMVIKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0102717_109039	Ga0102717_1090392	F076191	MKIIAENPAEEVLLRRIKALSDELVNQDNRSTDMPMWTILDNNKAGKDYGAVMYFTGKAAKQHIDENDHHYENPMIYIRSAHDNRELKDVVHLLILAGGNEIPSNHYGFLDNA*
Ga0102717_110446	Ga0102717_1104462	F080165	MKNKKFLLAILLSLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQNPQLAWVHYPYIRNKKTKQEYSIDKDGPMGGRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR*