3300007123: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764325968

Overview

Basic Information

• IMG/M Taxon OID: 3300007123
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052609 | Ga0102684
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764325968
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 122383058
• Sequencing Scaffolds: 17
• Novel Protein Genes: 17
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F046432	Metagenome	151	Y
F046433	Metagenome	151	N
F054110	Metagenome	140	N
F066860	Metagenome	126	N
F067846	Metagenome	125	Y
F078842	Metagenome	116	N
F081510	Metagenome	114	N
F095629	Metagenome	105	N
F097527	Metagenome	104	N
F103430	Metagenome	101	N
F103433	Metagenome	101	N
F105376	Metagenome	100	N
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102684_100005	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	239045
Ga0102684_100006	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	231265
Ga0102684_100089	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	58787
Ga0102684_100102	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	54592
Ga0102684_100174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	40647
Ga0102684_100303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella	31010
Ga0102684_102168	All Organisms → cellular organisms → Bacteria	9256
Ga0102684_105582	All Organisms → cellular organisms → Bacteria → Proteobacteria	4377
Ga0102684_107436	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	3410
Ga0102684_107655	All Organisms → cellular organisms → Bacteria	3324
Ga0102684_109863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2580
Ga0102684_111724	Not Available	2159
Ga0102684_116564	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1470
Ga0102684_116895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1439
Ga0102684_119059	Not Available	1243
Ga0102684_119135	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1235
Ga0102684_119443	All Organisms → Viruses → Predicted Viral	1211

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102684_100005	Ga0102684_100005100	F095629	MRELIICACLFGCFGVANAAAPVDQPKEVKVVHNDDSVALHKKVYKLEQRIERLEKLLAEKEGK*
Ga0102684_100006	Ga0102684_100006215	F105378	MKVNVYVDKLKKWVPISSDEILDRNKNLSDVKDKDAAITNLGLYDKFISKEALQSGFLPDVFTPENIQTDADHQFVSDSDKNNWNNKLNKPVEIQTNLEENQIGYDEVNEKFYIGLNNKNVLIGGASALDNIKIVNGFFSGNSQPTIIRNTKTREDGTLISPVFVDVQCVEYTGGDLGEVSVSYTSELINIYNTGSFTGAFQCMIVYPLGSVNR*
Ga0102684_100089	Ga0102684_10008940	F081510	MKLPKINVKAIKAGAKTTYNTAKILGKKYAPVVLVTTGLVGYGIAVYQGIKSGKKLEATKAKYEAKDAAGEEYTRLEVIKDVTKDVAVPVAIAVASTAAIGLGFAIQTNRLKAVSAALTAVTEEHARYRLQCKEVLDEETFKKIDTPMDQVTVEEDGKEAQSFVPKEGLMYGNWFKYSANYASDSPEYNEQWIRESIRVLEEKIARKGLLNFSDMLDQLGFDVPKAALPFGWTDTDGFYIEYDIMEVWNAEEQVHEPQIYVRWKCPRNLYATTNFRDLIPGRKELA*
Ga0102684_100102	Ga0102684_10010214	F081510	MKFNVNAIKSTAKTTWVTTKILGKKYAPYILLGAGLVGYGYSVYEGIKSGKKLEATKAKYEQMDAQGDPYSRMEVVTDIAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMVTEEHARYRLRAKTVLDEETFKKIDAPLETKTVEVDGEEIEVESIVPNEGDFYGMWFKKSHKYASDSPEYNEGVIKEADNVLTEKMMRKGMLTFAEVLDILGFEVPKAALPFGWTDTDGFYLEWDAHEVWNDDKQETEIQFYVRWKLPRNLYATTNFHDFIPKKTRKELK*
Ga0102684_100174	Ga0102684_10017412	F067846	MSIIADWERQEFNKWDKQCSKEDDYNRAIEMEIEAIKENISNCDDDVICVFREKMLDYDEVISAFDDDAFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLEQLEEDYRKGYILND*
Ga0102684_100303	Ga0102684_1003039	F054110	MNGRRYVVDTRQSWSKYDKPCKVYIVSRMYTEEEYKLTFPEKYKKGKTFKEKQLYKKESEYSSTKQHEVLLFLVRTYKGGD*
Ga0102684_102168	Ga0102684_10216811	F078842	MIISSIYKTADNDGLIAHIYEHLLAQYVLKYLQDNEFFVLSDIILSAKTYGDTCFMDAELYSSEAKKTYDEALREFDKLVISEDEILRAVGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKAYDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGSLKKDDKIINQLSYDFLEYIKNLSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSARIGQMVNSIELDIY
Ga0102684_105582	Ga0102684_1055825	F103433	NKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSSNDASKIPAYIKRVSIFLAALTAFLLALVVQKIRALFGRITASVFVVMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAANAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQLVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYMLIGLWADYVVKRTVKYE*
Ga0102684_107436	Ga0102684_1074362	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFGIAEDKE*
Ga0102684_107655	Ga0102684_1076556	F046432	MWEMTESKLSNIISKYQLPMDDYLVEIDGAFGRGEFFWVIKNQSTNKKYLLVNTYSHHGVESELECYREGGFDNLEAIPRRIETLELASDAEDEISKYLFGMYSIFEIKS*
Ga0102684_109863	Ga0102684_1098637	F103430	KAKLYKTKELEVDKIISTVNANHEAFTLDYPVIGYWRGETEETAVLYLSDERQKVMNTLNELKEVLDQEAIAYQIENDLQLI*
Ga0102684_111724	Ga0102684_1117242	F105376	MNEKPEVSAKEFGALQAKVEYIKDGVDKHTVMLERIENIARDNVTQAQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQTQVRRK*
Ga0102684_116564	Ga0102684_1165642	F046432	MWEMTESELSEVISKYQMPEGRYLVEQEGSFGESEFFWVIKNQLTNQKYLLMNTYSHHGVEDEVEYYREEGFDNLEAIPRKIETLENASDADDEISKYLFGMYSIFEIKS*
Ga0102684_116895	Ga0102684_1168953	F097527	MIYFKMEKIGNSTHNKEKKTRSENLVFNTIPAAGVEPAR
Ga0102684_119059	Ga0102684_1190591	F032313	MYRLLFLLFALTLMACDNDTPQEKPREQEKHEVPVPKPKPQFDEVGERIWYGQTPAMRLDSTDYGAGLTWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPKFVGGSITKEFTCRNGVILRHMQGIDINLVDTVNYVYNEDLNEIVLEGTGIRW
Ga0102684_119135	Ga0102684_1191352	F046433	MSELSASLDVLGVLNPVTPPDLTLQARDTSRNNPVIYVAEDGYRGTRTSDPCFRKMRRETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNGLVFLGMSELHFAATALAKRLRYHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFPDDEFEECEGRLKVYAGRGEIDKSSKILFLDDWIIGGDQVKERIAGFEAYNNPGAHKVSVLVMAASSNYIDNGIGADPLWGEATYPVEAYYRLKNDHDDWGMSRVTGIHSSTDRTFGCEVDDIAYLAIEGGILKGERIDRLTLPALVNIVRPYRNGENFDGLSRFRQLLEKG*
Ga0102684_119443	Ga0102684_1194431	F097527	MIYFKMEKIGNSTYNKEKKTRSENLVFNTIPAAGVEPAR