3300007104: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765034022

Overview

Basic Information

• IMG/M Taxon OID: 3300007104
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052580 | Ga0102629
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765034022
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 90015388
• Sequencing Scaffolds: 15
• Novel Protein Genes: 15
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F030786	Metagenome	184	N
F040149	Metagenome	162	N
F041827	Metagenome	159	Y
F043991	Metagenome	155	N
F047127	Metagenome	150	N
F049707	Metagenome	146	N
F051212	Metagenome	144	N
F051213	Metagenome	144	N
F070224	Metagenome	123	N
F081454	Metagenome	114	N
F101358	Metagenome	102	Y
F101359	Metagenome	102	N
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102629_100004	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	288217
Ga0102629_100179	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	28763
Ga0102629_100412	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	15213
Ga0102629_103263	All Organisms → cellular organisms → Bacteria → Proteobacteria	3881
Ga0102629_105300	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2675
Ga0102629_106683	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2233
Ga0102629_110603	All Organisms → Viruses → Predicted Viral	1516
Ga0102629_114281	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1158
Ga0102629_114587	Not Available	1135
Ga0102629_115128	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1097
Ga0102629_123998	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	725
Ga0102629_128627	Not Available	623
Ga0102629_128951	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	616
Ga0102629_129892	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	599
Ga0102629_135107	Not Available	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102629_100004	Ga0102629_100004128	F101358	LTQPITTDGMPQERTTHPDTHIIPKRQDVPRYQWNVLRSSGQLDEGWIDTEIIDENDVALVRMTKPVHRSNIDKLEKCVPLAVLQEQNIDFTNAYLQKAYGVMIKDGRLQPVADTTHATTSSQEQQTEVLLAQDEKYDRTGTDGEGNRQSVAGLAKAARLDTVVDNSPLVERVLGHVE*
Ga0102629_100179	Ga0102629_10017918	F103434	VVGFRPRRGRYLENGPHVVEVTLAAVKEGRTGRRFERGETFVVDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR*
Ga0102629_100412	Ga0102629_10041213	F101360	VSKESALRRAAIAAHIAKVASQEKKKALKELEEYMAPGDTSKPQVDGLQVGTVSVSAPQPRYQVVDENALVTWLEWNKPDAVHKVPAPWFVATAALEGFIKQTGEVPDGVEVVQGDPRISVRVSGAQEEAIRELISTGDISLIEIEGGDA*
Ga0102629_103263	Ga0102629_1032634	F030786	MLVVMVVTSSLQMLLKNGSATKGGSTMGTKKISLTDITEGDDSKEGVIKVKYFDDDGADKTFENNNNRILNTINSQHISFNSQTAEYSKPQLFLLYRSLKVDC*
Ga0102629_105300	Ga0102629_1053001	F049707	VSEYRSPHNDGHDPYILIWEYGTEVQQAEFTERWAEYELDTGWTVWHFRLEDGRVMTFRTLEWEQKDDVNHLTTIYFTPKHKENS*
Ga0102629_106683	Ga0102629_1066832	F081454	MKTFKLVLLLFITSASLVFGQEKRYFFKYEYLPNSKYLIKLKTDMDGGYKFVGSKEVIDKIGMNEVKMKMNMNMGSTISTQKKQNNNIPFVLEYTDYISEAEINGEKVNRKIPIQGVKLRGDIINGKKMEVKNVEGNIDEDTKKILTESIKQFSAIDTDFPKEGLKIGDSFDMVIPYKQSIPNAGDIEMKMNVKYKLLKVEKEEAYFDILIDFVMGDKNVKNIDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVVTQQKIK*
Ga0102629_110603	Ga0102629_1106031	F051213	MNLYKILGALILALSFVFTSCDWVGNEPTIEGDRFKTFDSSAQRKSFRVVNALGKRYNHKVDWHIIGITQLDSDTFFTKKVDTLSNGNLKISYDWVSFTVKERKSVIEVEVQKNETGQARSVFFATRNSRYQAHLPNMIITQWAK*
Ga0102629_114281	Ga0102629_1142812	F047127	MKKTFAFILLIIISLAKAQQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK*
Ga0102629_114587	Ga0102629_1145871	F040149	IKEQGIPVLFVEVEAWYDGRVSSSEILRSVGIALEREPRLSPVWSHDSEDAIDYFIYDASVPKGHALTAVRE*
Ga0102629_115128	Ga0102629_1151281	F041827	MKHFLSILALGCLLLSCNRDLENNETPAPPKEKLVLLKQLSKGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKEHRYWHNSGDGETNITYQYDNQGRLASSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNPKNTLRNMKGFPALVVEFYIRPFTYKLPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYYYYKETITNNYGNYGNCDYIENVGIDEKSHNNPTHVEGLWWLRAHRYFIKEE*
Ga0102629_123998	Ga0102629_1239982	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWIGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0102629_128627	Ga0102629_1286271	F070224	MKRLLFLLLTLLHYTAWSQVYNAPDSIYVASGAVYIPPISGEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSDENNIIIVNAGDPLVIENFFAYYAAEFPKMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRTLREVDRWQHPHLFVIEHDKKASRYYKYRIALVIYIDYH
Ga0102629_128951	Ga0102629_1289512	F101359	MDTDFSLFFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSAANGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQNFTDSYKETVK*
Ga0102629_129892	Ga0102629_1298921	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGNGVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKFSQLYNHLNLEK*
Ga0102629_135107	Ga0102629_1351071	F022002	NRTISGFTLGVTTPAEARAIIQRQGGKIILEDGIHAGSKDASYIVSGLNYARRPTQTVDMFFYKGHLHSIYFSFDGWDVLEQIESELEDKYGAMIESEGMFKKKGIVDAFTTLEVVRTFEYEEHVRIDHAYIAYTDEELERARSAEKESEI*