3300007100: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764305738

Overview

Basic Information

• IMG/M Taxon OID: 3300007100
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052571 | Ga0102544
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764305738
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 121526301
• Sequencing Scaffolds: 15
• Novel Protein Genes: 16
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Weeksella → Weeksella virosa	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F059076	Metagenome	134	N
F061926	Metagenome	131	N
F063777	Metagenome	129	N
F063778	Metagenome	129	Y
F076191	Metagenome	118	N
F081454	Metagenome	114	N
F085821	Metagenome	111	N
F092231	Metagenome	107	Y
F092232	Metagenome	107	N
F095630	Metagenome	105	N
F097490	Metagenome	104	N
F097526	Metagenome	104	Y
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102544_100092	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	79722
Ga0102544_100110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium	73351
Ga0102544_100199	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	53168
Ga0102544_100418	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	34894
Ga0102544_100995	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	18948
Ga0102544_101011	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	18659
Ga0102544_102235	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	9954
Ga0102544_103331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica	6865
Ga0102544_104534	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	5010
Ga0102544_109351	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2242
Ga0102544_111279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1792
Ga0102544_115032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica	1245
Ga0102544_116398	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Weeksella → Weeksella virosa	1111
Ga0102544_121384	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	795
Ga0102544_122287	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	753

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102544_100092	Ga0102544_10009219	F063777	MKILNIKISALPPENNSFWMKLLLFLCIPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEYLDDGYVFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNRLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKTINGYNNKEQIEIAISE*
Ga0102544_100110	Ga0102544_10011010	F097526	MQHFSAQPDGTAAITPYTQDDYRRLCERLDDDTVAALLHAHIDAFAADGNRQLLNRLTEGVRIAGEMEKAGRNGHPDSEEQTRRAYWDCHFAALQQHARMAGNQITNADNAAVSRLTAQCEKNGSCDTAIPLPRDDYGFAAALRDFPLNEHQTALLWRMALLTIAEITDATPSLVAHYLNGIGGEHLGRALAGKTVYPVTVVSNLAWLLHEQQKSGQLQRDLWHSAAALGSGDAEVQEIPQ*
Ga0102544_100199	Ga0102544_1001993	F081454	MKAFKFILLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNINEDTKKILIESIKQFSAIDTDFPKEGLKIGDSFDMVIPYKQSTQMGDIEMKMNIKYTLLKVEKEEAYFDMLVDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSIIIQQKIK*
Ga0102544_100199	Ga0102544_1001997	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSAANGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYKETVK*
Ga0102544_100418	Ga0102544_10041823	F092232	MINQAKFIADYNERNRPKFNDKFFQKSDDDIIEDLKDVILSCQRDKFYTIRVEKFEVIDDYAEIQRLLTGEETPTISIKDSDLKILKVTYYTAIGSQEDTFDVLIAVPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTSSASAKTQSITLKTNSNAVKMLRNFFEFKLSDGETFKKLASFSVYLFDHKVTLFEYYLARFGWYKTISEFKFDHVIKVTEEDPQDDEYDTFVVQNSHMKTPIYISAVRSVLDVDRILQSFVAAFIISINKYATKKFTLDNIYNTDFWICKLGFNFVSSETSVFTKGNAIIESLENSYDIPTQKRLRLPDEIKSNIYSVLKWMASEFSYIRLKDNLDASSKRIRWSEYIAAMYIMIINLKLRRLPEKPDPNVEVLRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGEGNGKKVAQNIRAVDISQLGIIDVNTSSASDPGVGGMLCPLNDKVFEYNSFTNEPEPNTWDANFDELLKIYRDQKGYTSAIALAEDAGLELTDDRNPESVAFDTEYLGNLIGKIAPTKAFETQLRPAFINMEDSGSIIFED*
Ga0102544_100995	Ga0102544_10099521	F097490	MNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTEKNYYLLSPVVSAMADHGLNHVTSEMIEGQMYYKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKTIKYKYNNEKEYKIDEFYTVFPYNGYSNEIGKKMHFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0102544_101011	Ga0102544_10101116	F061926	MIKTAKHIKTFLASVLLLIFVMNVSGLFVRLYHQETHQKTEKIAECSDKACYHKAHLQTKNDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS*
Ga0102544_102235	Ga0102544_1022352	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRSTSMPMWTILDNNKAGKDYGAVMYFTGKAAEQHIKENNHHYKKPMICVRSAHDNRELKDVIHLLILAGGNEIPSNHYGTLRDA*
Ga0102544_103331	Ga0102544_1033312	F092231	MIIFPPQEFITWINMLVQFPWPIQLNDFPPYAEQLGWTPTSRPTWFNVLPDNDYAVTNISSDRDGNVRNLFLPMASNETEDDEGAAELNDHFVSCVAAGRKAWGEPFLLEAGDGPGVTWRFPGDMFTQVTSGCWSVLFQFFTPEGRRQFL*
Ga0102544_104534	Ga0102544_1045343	F085821	MSNIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHDLLNLWYESNKRLLLEQDKGKHDEAYINAWNEANVNKTLSIIRSGETIASCKEDVAKHSRTLNGEYEQNISLLDEYCRALLYTAETTESQQELVAEIQSHIALLKDLYKKVNKIK*
Ga0102544_109351	Ga0102544_1093513	F095630	MYSSLYKISKDNGLLAHVYEHLLAQYVLKYLQDKGFFISSDITLTAKTYGDTCFMDAEFHNPEAQDAYNEALRLFDKRDIPGSAALRAAAECGIEMNRLVTELVQDKLLHKLSSVQSSAWRQQSDITYRKADDKSSVNTLFCMPYIKYGVESKNLFPEYVLEYSVDEKYIQSPVDQALAAVVIQAVALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDNIVDQLKREFMEYMQFLSASSFCDNLQAALVRCSHNYEQVLLGRDTLNSILGGCVIGGEGWLKMADNKLIGQILKAIEIDVYDI*
Ga0102544_111279	Ga0102544_1112792	F063778	MPETISEGAKQQLLQQLQDALGLVKNADTSAHDVAAITHSAADGHQLTEVMLQEMTAARGYLKSCADQIEYAISSIKAIPLDPPPDD*
Ga0102544_115032	Ga0102544_1150322	F092231	MIIFAPQEFITWTNTLVQFPWPIQLNDFPPYAEKLGWKPTPRPTWFNVLPDNDDEITMISSDREGNVHNLFLYMASNEAEDAEGAAELNDHFVACVAAGREAWGDPGDMFSQVTGGFTAVLFNFFTPEGRRQFL*
Ga0102544_116398	Ga0102544_1163981	F059076	MTNKILLLGLLLGGVSINAQTINETNAAGKTKQKVGINTTIPTRTLTIKNAAADKGKPVLRLVDAPVYSKNVNSDMDADLGGNTATSTNYTDYRPLLVDAVGDVYQGLPINNMSILTLTISNVNGDWISNFDTGINYNKYAVAIMSATFKMPSPASGGLVMLRGGNNVPSVDFGGGKYGVTTAPATVLLQQHGANWAISADYPNIGVYELSSGSTALGQPVNGTWVITLLVGKRDAVNFTELNFNQSGGSTGTGRNDNTYKAGLESFLQKLE*
Ga0102544_121384	Ga0102544_1213842	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKLLYLSASLVFIAIYLFDLYQNDFDFAKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0102544_122287	Ga0102544_1222872	F054111	LKLMEHLKNLQELTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLSLETKSLSTSDKDLFLNILHKEILSL*