3300007071: Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC8 2012 metaG

Overview

Basic Information

• IMG/M Taxon OID: 3300007071
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0115600 | Ga0073930
• Sample Name: Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC8 2012 metaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 249435303
• Sequencing Scaffolds: 6
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Canada: British Columbia
• Coordinates
  • Lat. (^o): 49.9543
  • Long. (^o): -116.5155
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001489	Metagenome / Metatranscriptome	686	Y
F014457	Metagenome	263	Y
F020112	Metagenome	226	Y
F036417	Metagenome / Metatranscriptome	170	Y
F045123	Metagenome / Metatranscriptome	153	N
F046219	Metagenome	151	Y
F071369	Metagenome / Metatranscriptome	122	Y
F078344	Metagenome / Metatranscriptome	116	N
F105479	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0073930_1013603	All Organisms → cellular organisms → Bacteria	2533
Ga0073930_1046543	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	853
Ga0073930_1046671	All Organisms → cellular organisms → Bacteria	851
Ga0073930_1058382	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	693
Ga0073930_1069414	All Organisms → cellular organisms → Bacteria	589
Ga0073930_1070818	All Organisms → cellular organisms → Bacteria	578

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0073930_1009536	Ga0073930_10095362	F046219	LHKLDAAQSSEAGLLLRRALDLRAAVKLGIQITLDEIRADEFRAMVVLEEERDALDREQMNAHGR*
Ga0073930_1013603	Ga0073930_10136033	F078344	LDEWAAFATQLTPIQLARAEGWIRLAGQPASHETLAPLENLVVALPALRFWASLSPQQRQAALNGERLLLERMTPQQRELFLQAFSRPLPDLVGVPLIKRYVHEDNYGSLSVRIGSQGETITMTTRIGDPPPPHFRIGRSVQRLDKPLITLLSKDGEEATQQGYSFSSLSEPSPGSPRGWLLYFAVDDWQRVYILVGE*
Ga0073930_1046543	Ga0073930_10465431	F036417	MVYYARVPLRQRIPTVLVRLATDDGEVIFRARWKRSALELQRTILFRLRRGIPLWFEDEWGHDLCFRPERVWAAMVDGRPA*
Ga0073930_1046671	Ga0073930_10466712	F014457	FGEAAKYFVATGWPGQPTPAAAEVVASNVLTDMAAKVIVDGWTVDQTLEWGDQKIKEIYESLGNR*
Ga0073930_1058382	Ga0073930_10583821	F020112	MVSKAFRKCVDLIEEMLREGYRLQIPSTHVERLIKIHVGADKRTIQKYMKMLTEDLGFLENTAKNSLGIIIYRINIQTIEQHVSEHLKEKLRQLTLLDMRLKQ
Ga0073930_1063940	Ga0073930_10639401	F045123	LYADVMLFQGDTPLVVVEVEGNARQQREGYEEARLKGAAWNLENPVPLLWVAAGNQDTLYQLQPRDAAIHYALLEGEPPDKLLAPARLLEAIGDYLRRTETEAGQELRYRDALQRALAESRGNSAHEKFRNWIDALAGVSARKRLPTPLREAQQMVRQARQSGQPNFALALALRHTARGYFRPLSRNDAVRRTGRYYTPTEVIQLMVESLA
Ga0073930_1069414	Ga0073930_10694141	F071369	MDATRNIAGQFSRIADGAALRAISQAFATESGGYLTRNHMEIWADFAEQACGISRAELFAWEPPVETVGSGYVTKWFLVHCSPEEAVAAFHLGPPPAAKERLGKRALGIGQGGAAGEGLLQPQPGRHPLTQALERLGLNADLADYFFRLHREIEPFEQEEGWEYVPEVVRTGEQRQRFKRAYIEKILAE
Ga0073930_1070818	Ga0073930_10708181	F001489	SQPDPEFSEQYGVYPSQAHAALMRRDFLSYLFAGNLWPYGPVTAATIQSILITTPQVLDFERRVVEAEERGHHDAALQKIHDYVWQLIDRYGEAYVRKRIAEIDEAALNAGSRIIFDPPRRDFLRKYFDVPLENTTRFLEYREYLYLNVLGFPPEPIYIKTWPKEIPQPTMAAV*
Ga0073930_1074246	Ga0073930_10742461	F105479	EIYLDRAALWDAGLSAEDLAAFLADYRYGDNIGPYVRPEAIRRDRLSHRSFAAVLPTSFIAELARRDLSRYGETRYVEADPDGIPSL*