3300007066: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160765029

Overview

Basic Information

• IMG/M Taxon OID: 3300007066
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052651 | Ga0103285
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160765029
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 48900909
• Sequencing Scaffolds: 5
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F040685	Metagenome	161	N
F042387	Metagenome	158	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F081456	Metagenome	114	N
F097527	Metagenome	104	N
F101358	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103285_100003	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	352849
Ga0103285_100094	All Organisms → cellular organisms → Bacteria	43768
Ga0103285_100546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	12471
Ga0103285_109750	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	814
Ga0103285_111825	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	656

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103285_100003	Ga0103285_100003224	F101358	LTQPITMDGAPEKRTAHPDAYIIPKHENVPQYLWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKPVHRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMVKDGKLQPVADTTHTTHQNDSTDEQETEVMPAQGDDTYEHLGGDSARQLVGSVAAKASDGEVDNSPLVERVLGRVE*
Ga0103285_100094	Ga0103285_10009429	F081456	MFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPVSFMAKLVMTAIGFLLCAITVILYTISAE*
Ga0103285_100094	Ga0103285_10009433	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDSKLKETELNNL*
Ga0103285_100094	Ga0103285_10009440	F018385	MTEYVNQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTVYSPEGRVSKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK*
Ga0103285_100094	Ga0103285_10009442	F071329	MLPVAKIIISGLTSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDNVEIED*
Ga0103285_100094	Ga0103285_10009443	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHQIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWIA*
Ga0103285_100094	Ga0103285_10009444	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEEVKLDEYIDKRSNVKPSWIGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0103285_100094	Ga0103285_10009447	F027205	VASRLIVSADDILKAVKESEEFERKALNEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0103285_100094	Ga0103285_10009448	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPTPFFYESRQYHIKSFMRVPGSTDLWITAERERGHWYTFRLSDDQKSKFTRHTITNEKGHQTYDWVLKNVEWAADTIRYF*
Ga0103285_100546	Ga0103285_1005461	F097527	MIYFKMEKIGNSTHNKEKKTRSVNLVFNTIPAAGVEPARPCGHWILSPARLPIPP
Ga0103285_109750	Ga0103285_1097501	F042387	LVSCSRENDKMTDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGEKVVFVYEKDFITSKIRYSQAGEEHGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVIDEEVTYDTKNSPYKNIKGFSVLAVEFCGLDKDENTIADYLNFRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNI
Ga0103285_111825	Ga0103285_1118252	F040685	MKKLLFKLFFALAFTSISLHGQEKILQVEFSSFKGMALYSRQYTLNSLKKEFSAKPLMGQKEELSKEVSLPNTPKNWEAFTKKINLDKFKKLRDCPSEQAFGGQDKVIIIKTNKKTYRKMNAYGNDHDRETWYDLLQIIAEEFEKI*