3300007065: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159207311

Overview

Basic Information

• IMG/M Taxon OID: 3300007065
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052632 | Ga0102727
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159207311
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 44978358
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041827	Metagenome	159	Y
F043990	Metagenome	155	N
F071327	Metagenome	122	N
F071328	Metagenome	122	N
F077404	Metagenome	117	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102727_100004	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	350978
Ga0102727_100047	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	46509
Ga0102727_108402	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	873
Ga0102727_109950	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	749
Ga0102727_112339	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	619

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102727_100004	Ga0102727_10000415	F071328	MEKNKSKLSNIARMAAEAFTGLICHVNKDCKMSQKHWTFTNIIRYIEDYKKNPQLIERMKWEFISEGECIVEFVKLYKHLVLERTIDPKIHQTTAIYLRYSQQLLLKKKRAIRRLGIGKKNVSAILRLCGIHYREYGDDEHRVFFLDTDVNIYFCKHYQLPIYILQRIEFSNKEYRSFILKVLPVKKSEW*
Ga0102727_100047	Ga0102727_10004730	F077404	MNILKTTFAFFFALCFMMGANCYAQKTESIDAEASKRELKRNAIYIPPALEEYADTTLLHQRFNVENKGNYLYTPFTKDNEPSIPFNYGFLHPLDERFYNCFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDASNKDTSKLADLKYLDFRRIKSDFSYGHPYQGFTDNDRVELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENLYTRGRKLILTDGKTTLYLYFLMIDSVALNFDTEVLPYIKGVFRFNRVR*
Ga0102727_108402	Ga0102727_1084022	F071327	TVVVFGAFIFLLLQVHLSYKGRISEVLRKTSFFSMMLLYVQGILGVFLGIYSPEFSEVSGFSSFLKHFEYGISILLCAGMMTYVYTYIKNNKQLSLKIVVIALVAALLFEYAYPWRLIFG
Ga0102727_109950	Ga0102727_1099501	F041827	FQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIIKERRFSYNHTQNFETNITYQYDGQGRITSSHAISSKKHPACSVERKHTYTYQGNKVTVKIEIGTDNCSSPTEAAKEKTITLFVENGRVVKSLNENNQIIETIEYLNPKNTLRNMKGFPALVVEFYIRPFTYKLPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYDKRKSHDNDYLEIEEVNIYEKSHNDPTHDNYLSSASPARFYTKEK*
Ga0102727_112339	Ga0102727_1123391	F043990	MIKKLGIIFTFGVIILEIVVYANHKIERSWIEGEFGVNMSNMNIDEKYREEEWVPNGDGEKTIILTYDQLDSSFTKSNKLPIKEDLPPNGTPEQFLNTTNGYYKYVVDENDDWNFGILIVDTARKEICIYNQIL*