3300007047: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160643649

Overview

Basic Information

• IMG/M Taxon OID: 3300007047
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052598 | Ga0102637
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160643649
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31803617
• Sequencing Scaffolds: 4
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F036281	Metagenome	170	N
F051214	Metagenome	144	N
F067847	Metagenome	125	N
F081456	Metagenome	114	N
F101360	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102637_100246	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	10797
Ga0102637_100270	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	10439
Ga0102637_103781	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1097
Ga0102637_109247	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	618

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102637_100246	Ga0102637_10024610	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREKGHWYTFRMSDDQKSKFTRHTITNEKGHQSYDWVLKNVEWAADTIRYF*
Ga0102637_100246	Ga0102637_1002462	F018385	MAEYENQWGPYKEHSIEKDRDPALDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTTYMFTHDGLNELVFMPGSSRKTISRLYHEEVK*
Ga0102637_100246	Ga0102637_1002465	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFVVTYDPIHRIIVMRVFLHDEDLTIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0102637_100270	Ga0102637_10027012	F067847	MFSHIIRVKGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYSGILPEKIMKQVAEDPKYKELDSKLKETELKNL*
Ga0102637_100270	Ga0102637_1002708	F081456	MFEEPPIYYILISLIFLIVFGAISFATWMVWLTAISFFAKLVVTAIGFLLCAITVILYTISAE*
Ga0102637_103781	Ga0102637_1037812	F101360	VSKETALRRAAIAAHIAKVASQEKKKALKELEEHMAPGDTSKPQIDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAAALDGFIKQTGEVPDGGEGVPGEPRVAVPP
Ga0102637_109247	Ga0102637_1092472	F018385	MAEYVSQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTVYSPEGRVSKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK*