3300007043: Human stool microbial communities from NIH, USA - visit 1, subject 638754422

Overview

Basic Information

• IMG/M Taxon OID: 3300007043
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052569 | Ga0102536
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 638754422
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 102011251
• Sequencing Scaffolds: 10
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Erysipelotrichia → Erysipelotrichales → Erysipelotrichaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F039198	Metagenome	164	Y
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F047125	Metagenome / Metatranscriptome	150	N
F067720	Metagenome	125	Y
F067844	Metagenome	125	N
F074964	Metagenome	119	N
F076064	Metagenome	118	N
F088921	Metagenome	109	N
F090484	Metagenome	108	N
F098313	Metagenome	104	N
F099406	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102536_100052	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	157676
Ga0102536_100073	Not Available	141128
Ga0102536_100795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	22583
Ga0102536_101409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	10579
Ga0102536_103170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Erysipelotrichia → Erysipelotrichales → Erysipelotrichaceae	3854
Ga0102536_104908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2313
Ga0102536_106258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1763
Ga0102536_107066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1559
Ga0102536_107988	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1367
Ga0102536_120468	Not Available	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102536_100052	Ga0102536_10005295	F076064	MIPGRALDNLFYLQYDLPPEASFHATTEEAKRPDELYIRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKRRNETRRHPMPVLKLY*
Ga0102536_100073	Ga0102536_100073117	F098313	MKEKEFDFVIYPLKLIITIGLDYKTLCDRFENAELDHEGEWGDEGDLDSEVSFMNLVRDKGDDRAFKLLWNFQSENDMTIQNICHESFHVAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEEEKDGKEN*
Ga0102536_100073	Ga0102536_10007336	F074964	MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDNKVDKEKGIEAKAADWCADNVVYGGEYKPFGFATAETLETKSSAKWIVKETDEYKSTYVAVKIKSYSIRTVAKCVSEYLAHESTQQ*
Ga0102536_100073	Ga0102536_10007362	F090484	MDIPKNPSDFFLLQIMKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFNELFRMTDSTFVARRYRVNGVQLTLGCGKVNLPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENVQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSKQNQIIRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKSGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIGNMDISTQSLPNISITVGNDKELDGESVFKDIPLEELSFYSDTYLYPSSQYSSL*
Ga0102536_100073	Ga0102536_10007381	F099406	MAEVGYNSKFEGQEVDSRLENVVQAAPGTSSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDYVNKKYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEESGGKVLESLGMVSTGVDSNYLDLSMFSGNSGTLDEGSFGKVLDAYNNKITLGKLADNYYSLDYFLEGRDFEGVFELKIVLVSFSDTNTGEGVSESDIEIQVGTYTVTQDKAYKVLNNMVTLSNTMMSYLRFMSKAPRVVTTLANLPKDTHNIIANVASATNLSMTVSSEYVGREWQARVNNTTGTDITQPLPTSGQFQSMSGDSVVIPKNSFIELSIWYINDKLVIRVGEQA*
Ga0102536_100795	Ga0102536_10079516	F067720	MASTTYEHFVDTNKMYAAQEQFRDITKMVTKCHRFASIGKMVRNAGQLPQPFWLSAACGGGSRSAARCAART*
Ga0102536_101409	Ga0102536_1014095	F039198	MQITSCEIANNKYIQIYLTEEELEKQETKDLINKYKEEKYGMAIFVTGKENYPEVLKKIVIKQEELNKNVC*
Ga0102536_103170	Ga0102536_1031704	F067844	MNTLAAETASAWYLILNRKLQTLPIYKAQLSSPLPRPLTMGTQQVSAGAAVITPQHRSYRVPQGSPQVFGGP*
Ga0102536_104908	Ga0102536_1049082	F047125	MDVVLLLMVLGVMLSGFWAADALDHIRKEIIRQEGKRRGWWS*
Ga0102536_106258	Ga0102536_1062583	F088921	LGGCKKIAVKTSALGAKIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRYKMWSK*
Ga0102536_107066	Ga0102536_1070661	F026592	GTASPQGIAALAAQGGVATLTERSDATFSVKQFSSADGE*
Ga0102536_107988	Ga0102536_1079883	F042936	VWKTKEGIMKTSEIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG*
Ga0102536_120468	Ga0102536_1204682	F044554	ALCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTIFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFDSHRYCFSAFLVL*