3300007039: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764305738 replicate 1

Overview

Basic Information

• IMG/M Taxon OID: 3300007039
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052662 | Ga0103962
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764305738 replicate 1
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 36664906
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F095633	Metagenome	105	N
F101360	Metagenome	102	N
F103431	Metagenome	101	N
F103436	Metagenome	101	Y
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103962_100415	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	8670
Ga0103962_100862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	5222
Ga0103962_108413	All Organisms → Viruses	809
Ga0103962_111264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	637
Ga0103962_114505	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103962_100415	Ga0103962_10041510	F101360	VSKENALRRAAIAAHIAKVASQEKKKALKELEEYMPPGDTSKPTIDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAASLDGFIKQTGEVPDGVEVVHGDPRISVRFSTAQEEAIRDLISTGDISLLEIEGGDA*
Ga0103962_100862	Ga0103962_1008622	F103431	MIDLDALIVGMLFFIQLFLQGIAWRVAIAHFLHAERGNAAAAAFDGAFGEDIADCHAEDDNDKDAESQKEGFHVCIPEG*
Ga0103962_108413	Ga0103962_1084132	F105377	VRDFDKLPLLTPEEAFERAWEEGGSDHPVFDRGYRVRGLNDWKAIETLLRQNDVPDITVASFGLKRFEEIFDAFAMMSERGWRLWQTSANVYVGGERKTVQAIRAHYRGD*
Ga0103962_111264	Ga0103962_1112641	F103436	KDWVSKCDVSSKREALKKIDSAFALWGGAEYEAAVHLLDENEVFLKKSDWPYYALGIEILKARKHEFFNE*
Ga0103962_114505	Ga0103962_1145051	F095633	EAWRSEGLTAGELRTMGALAVEATEELKKTTIRKEVVLLGGVPFNSWDEFAKAVQEMAAHSYEPISVKSNTKRLIATAFLDDEGEMSVEERFVPEEVFIDLSRTRCDAEEDRNHKSYEFTCPALMEHPDGKLYLTRKAYVISVIDVNGSQEVDFNIIYGGLN*