3300006987: Marine viral communities from Cariaco Basin, Caribbean Sea - 24_WHOI_OMZ

Overview

Basic Information

• IMG/M Taxon OID: 3300006987
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067852 | Gp0122841 | Ga0098063
• Sample Name: Marine viral communities from Cariaco Basin, Caribbean Sea - 24_WHOI_OMZ
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 78994322
• Sequencing Scaffolds: 6
• Novel Protein Genes: 8
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Caribbean Sea: Cariaco Basin
• Coordinates
  • Lat. (^o): 10.847
  • Long. (^o): -65.114
  • Alt. (m): N/A
  • Depth (m): 237

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002697	Metagenome / Metatranscriptome	536	Y
F030463	Metagenome	185	Y
F039681	Metagenome	163	Y
F044724	Metagenome	154	N
F052647	Metagenome	142	N
F066855	Metagenome	126	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0098063_1000764	Not Available	6021
Ga0098063_1008804	All Organisms → Viruses → Predicted Viral	1481
Ga0098063_1012437	Not Available	1172
Ga0098063_1021027	Not Available	824
Ga0098063_1027470	Not Available	688
Ga0098063_1030182	Not Available	647

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0098063_1000764	Ga0098063_100076412	F052647	MEILDFMPLIYVSVILTGAYFIGKLLLNHMTQLKKVKRGIEVQKEKKSFENGLEDLIDNSPEMYVKVMQELEHLKTNGADEKQMSSLQRKADLLKMVVENQEIINLAGKPLFRVLGKFVGNIGR*
Ga0098063_1000764	Ga0098063_100076413	F039681	MSTSTGFEIGDPTKLRIKPTYNVGDYGHDVSFPLLLSQATNLVTLTPSTSSFHQTQHDSANPIDEVLSFISESDKCELLHNGNDTDFDKTWLIQPDMSFFSYKIALSFGIGLKVSAYTSGNITAESIRLTLTELGDGVGDIVIADLTIPTGASALSATGEQIIMFHADILQKIKFTNNRPVTMRIRTVSSKSGTATYQIGMLPVYPMIPTAVPKQWLLSQVEIHAHASLDHAFPIWRDSDNDQRLDYSGCSPSGCNSALDEMGSV*
Ga0098063_1000764	Ga0098063_100076414	F044724	QTLIECVPFMASTAGLTAGQTYLTKCIIESNSINLLPKVFQVPPILGGLGVFTNSLTPMLDAVECNTPLQLGATQQFRIYGQNFIANTVANRLGLGLHYSESVTNMKEKFYDMPTNETNTGTAATSVAGENVTINDGVFLEDIMPTVVSGVVTLSESYIGYMSVTSNDFGNSMPLNVPVQPISTALGTTTSVGMAKQPHYTNIHMPMKSSCLISHSYVQDEALTATGNFTITYGYTKS*
Ga0098063_1008804	Ga0098063_10088041	F052647	VGLTATYFIGKLILGHMTQLKKVKRGIEVQKEKKSFENGLEDLLDNAPDMYVKVLQELEHLKANGADEKQMSSLQRKADLLKIAVENQEIINLAGKPLFRVLGKFVGNIGR*
Ga0098063_1012437	Ga0098063_10124373	F066855	MKIFTKSRVANFTAGVVILYTVYAVVFQEIQTEYLAILSGLRGVSAKFLWDSTSDHMDK*
Ga0098063_1021027	Ga0098063_10210272	F002697	MTKQIKYFSWFMKSRNKFATCRGVDEHDYYDEWSGKFKTFKSKQWTDQKGYPCYNFWDIDSEHPRTAVNYSVRLA*
Ga0098063_1027470	Ga0098063_10274701	F030463	MTEITEMIAIIGIITGSLFGLFRYEISKLCKEIDTVRYDIKEIHDKVFH*
Ga0098063_1030182	Ga0098063_10301821	F039681	PIDEVLSFISESDKCEQLHAGNDTDFDKTWLITPDMSFFSYKISLSFGIGLKVSAYTSGNITVDNIHLTLTEVVDGAGDTVIADLKIPTGASALSATGEQIIMFHADIMNKIRFNNNKPIKVRLQTESTKSGTATYQVGILPVYPMIPTAVPKEWLLSQVEIHLHASLDHAFPIWRDSDNDQRLDYSGCSPDGCNSALGEMGTV*