3300006983: Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Dobu 'control', cg1dc

Overview

Basic Information

• IMG/M Taxon OID: 3300006983
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117787 | Gp0124811 | Ga0101647
• Sample Name: Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Dobu 'control', cg1dc
• Sequencing Status: Finished
• Sequencing Center: University of New South Wales
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 22710283
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
• Type: Host-Associated
• Taxonomy: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Cinachyra Sp. (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Dobu 'control' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.752083
  • Long. (^o): 150.854133
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013419	Metagenome	271	Y
F017577	Metagenome / Metatranscriptome	240	Y
F065740	Metagenome / Metatranscriptome	127	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101647_100145	Not Available	2862
Ga0101647_100215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2465
Ga0101647_101334	Not Available	1216

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101647_100145	Ga0101647_1001452	F065740	MFKFVNYIHLLTTTYRYQNYSVNQTRTYSGNDYSFLPFGVSTGAGTKGGDRSSTRLVVGLNQISVNIFAEAVQSQWQLDLKTVSLDVTDDSDDALIRSEVWRIASYSIDTTRLILTLSSPLDAAASDVPRRLLTTELVGALPTNG*
Ga0101647_100163	Ga0101647_1001633	F017577	MPTTFPSIQPTGRRFSAPMFPTSSLVSQSGVTTRRQWGSRPSRATLELEFSNVTDANASALLSAYHSAEGSFDSLTLPDIVFNGADATLKTWLSGSATGAGLVWSFTEGSPPTVNSVARGIHEVSISLTAELR*
Ga0101647_100215	Ga0101647_1002152	F065740	VQYKFVNYVHLVGTDHRYQNYSVNETRIYDGNTYVFLPFAVSTGAGAKGGERSSTQLAVGLNQVSVNVFAEAVRGQWQLDLKTVSLNLTDDSNDALIRSELWRIASYNMDTSRLVVTLSSPLDAASSDVPRRVLSTDLVGALPTSGALVVN*
Ga0101647_101334	Ga0101647_1013343	F013419	MRESKYSFLYRNSDGHVMRPESFLNINKGRTLSSSQLRMLGIEKIKNPSYKRQAASIKRQAAST*