3300006980: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 158337416

Overview

Basic Information

• IMG/M Taxon OID: 3300006980
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052618 | Ga0102716
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 158337416
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6449364
• Sequencing Scaffolds: 1
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F067847	Metagenome	125	N
F081456	Metagenome	114	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102716_100018	All Organisms → cellular organisms → Bacteria	42465

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102716_100018	Ga0102716_10001815	F027205	VASRLIVSADDILKAVKESEEFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPKRIRKRAENERD*
Ga0102716_100018	Ga0102716_10001822	F018385	MSEYVNQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTVYSPEGRVSKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK*
Ga0102716_100018	Ga0102716_10001829	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVANFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDSKLKETELNNL*
Ga0102716_100018	Ga0102716_10001833	F081456	MFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPISFMAKLVMTAIGFLLCAITVILYTISAD*