3300006887: Combined Assembly of Gp0125121, Gp0125656, Gp0125657

Overview

Basic Information

• IMG/M Taxon OID: 3300006887
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117429 | Gp0125121 | Ga0102491
• Sample Name: Combined Assembly of Gp0125121, Gp0125656, Gp0125657
• Sequencing Status: Permanent Draft
• Sequencing Center: Shell Corporation
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 85469608
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → Flammeovirga	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: UK (Newcastle upon Tyne)
• Coordinates
  • Lat. (^o): 54.971158
  • Long. (^o): -1.703654
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020363	Metagenome / Metatranscriptome	224	Y
F048390	Metagenome / Metatranscriptome	148	Y
F064732	Metagenome / Metatranscriptome	128	Y
F074913	Metagenome / Metatranscriptome	119	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102491_107470	Not Available	1656
Ga0102491_110644	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	1312
Ga0102491_110791	All Organisms → cellular organisms → Bacteria	1301
Ga0102491_111916	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → Flammeovirga	1220
Ga0102491_135604	Not Available	595
Ga0102491_145252	Not Available	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102491_107470	Ga0102491_1074701	F048390	MVRFVRTLQHRVTPQGRDFYALSIPPQVAEALELKDGGQVSICVNPVKKGTFEVTIKA
Ga0102491_110644	Ga0102491_1106441	F064732	MEAAAEAALAAAPERCTMPPAQSAERHVKFPSSQMDQGPYIAAIATRSTSLQDPVPPGHPEDTN
Ga0102491_110791	Ga0102491_1107913	F048390	YYGSNMVRFVRTLQHRVTAKGRDFYALSIPPQVAEALGLQAGGQVTIEVRPVKKGKFEIVLKPLSLGDNLNP*
Ga0102491_111916	Ga0102491_1119162	F074913	VARVFALVVRCRIIRLLLCSRVGKNRDTRREPPAEAGAGRGASHKTASLVTQLSRHGAPMTY
Ga0102491_135604	Ga0102491_1356041	F020363	WRRVAVARVFALVVRCRDVMLFVYSRVGKNRDTRRETPAGAGAGRTADHLTVLFSQKVLAVRKANDIYRPVMLRHFILLKRSG*
Ga0102491_145252	Ga0102491_1452522	F020363	MNFVKKLSDRLPLTFGGMWRWRRVAVARVFALVVRCRVMRLSLYSRVGKNRDTKRESPAGAGAGRTADHLTFLFSQKVLAVRKANEIY