3300006886: T0 (3) T65 (live) enrichments of Methanogenic microbial communities using Athabascan oil sands

Overview

Basic Information

• IMG/M Taxon OID: 3300006886
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117890 | Gp0125662 | Ga0102494
• Sample Name: T0 (3) T65 (live) enrichments of Methanogenic microbial communities using Athabascan oil sands
• Sequencing Status: Permanent Draft
• Sequencing Center: Shell Corporation
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 80645783
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Epsilonproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Methanogenic Incubations Using Athabaskan Oil Sands From Alberta Canada
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Oil Sands → Methanogenic Incubations Using Athabaskan Oil Sands From Alberta Canada

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → oil reservoir → sand
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Alberta, Canada
• Coordinates
  • Lat. (^o): 57.02
  • Long. (^o): -111.65
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025668	Metagenome	200	Y
F048134	Metagenome / Metatranscriptome	148	Y
F059711	Metagenome	133	Y
F102132	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102494_104429	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Epsilonproteobacteria	2209
Ga0102494_105928	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1821
Ga0102494_106026	All Organisms → cellular organisms → Bacteria	1798
Ga0102494_106263	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1757

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102494_104429	Ga0102494_1044292	F102132	MSTRKVIKNLEAAIDRICEDIKDKKTGSGSDKLDSLAKLVNSYGRLIERKKEKAYDKMMDGDPKQYKRMLKAGNKDMKGIIR*
Ga0102494_105928	Ga0102494_1059283	F025668	MTKESIIEAQDYLRIKTEDGYKRIIDIHALFKRHNTNEVIKFLKDYLREKTNSLKSMIVIDKTHQKVDRIVAAMFRISMAIKSLEEGEEVIILERPEQGAKESGKLHKWHSGGHNR
Ga0102494_106026	Ga0102494_1060262	F048134	MESRTNVQINLSIPEQYRNLLRRMAAERVMSDPSQVVTGASIATELLLEALKEISGETKKEGENK*
Ga0102494_106263	Ga0102494_1062631	F059711	SINLLIEPGLYTKLKMIATMKKTSMSKIIRAGISLWIDQYEKANNIIQTKKEDMDHECSDSEENRK*