3300006836: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 861967750

Overview

Basic Information

• IMG/M Taxon OID: 3300006836
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052567 | Ga0101916
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 861967750
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 55131681
• Sequencing Scaffolds: 7
• Novel Protein Genes: 12
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101916_1000434	All Organisms → Viruses → Predicted Viral	2664
Ga0101916_1000782	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1899
Ga0101916_1001225	All Organisms → Viruses → Predicted Viral	1500
Ga0101916_1001964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1219
Ga0101916_1003414	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	944
Ga0101916_1003956	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	882
Ga0101916_1005034	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	770

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101916_1000434	Ga0101916_10004344	F074985	MELTDGGWYKTPRIIKGTDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRIYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFSVSNFEELYIDQTFRRLTPVIFRHFDHSWIVMGLELSDSEEAEWFIYLKRQNGEGMTRVHFTKDQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDHIKAMHID*
Ga0101916_1000434	Ga0101916_10004345	F036281	MISLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEDRKTYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREIGHWYTFRMSDDQKSRFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0101916_1000434	Ga0101916_10004346	F027205	LKAVKESEEFERKALTEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAK*
Ga0101916_1000782	Ga0101916_10007821	F071329	IISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHIDIED*
Ga0101916_1000782	Ga0101916_10007822	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYICNNREYQIACEFLRQIMHDKIDLKDEWIA*
Ga0101916_1000782	Ga0101916_10007823	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0101916_1001225	Ga0101916_10012252	F043991	MSEKTHSAIDYFDPNGNLNEEAHEFEGVKLEDYIDKRSSFKPSWIGRYSEQMHFDLESGVEVSFYRQLDIVYADILFYEGIRTILFKCRQKKNLTRFISRVLELAQGEPKNIHPDFRA*
Ga0101916_1001225	Ga0101916_10012254	F071329	MLPVAKIIISGLSSIGAGMIASRLTKPLVSNANGIAKILLWFGSVGTGVAASAIVSREVELQFDATVKAVQEARDHVEIED*
Ga0101916_1001964	Ga0101916_10019642	F067847	MFTHIVRVKGFFDDEPKAKKLYFHLSRREMFDFILQYDNIKNFNEWVQSAIDAEDLYTLMEFFDDLIGSSYGERQGDHFVKTPQIKESFLNSPEYEKLFDEFMDNPGLVKQFYEGILPEKVMNQVKLDEKYSELEEKLKETEFKNL*
Ga0101916_1003414	Ga0101916_10034142	F018385	MAENRWDPYAEVPIETHRDPVKDDHLIYGVNVPHFTVTVYSPDGRVNKYWNARILEDMLGYCRIACPRDGKILKFKWSDWSVYMFTHDGLNELVFMPDSGRKIITQLFEKEVK*
Ga0101916_1003956	Ga0101916_10039562	F036281	MITLIKVDDGPVDIYELRMQYLAKLKETDGVMLPTFIYRNRELFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDLKSKFTCHTMTNEKGHQTYDWVLENVEWAADVYRYF*
Ga0101916_1005034	Ga0101916_10050342	F018385	MDEYVNQWESYKELSIENDRNPVLDDQVIYGNDVKHFTLTVYSPEGRVSKYWNTRILADDLGRCRIACPREGKILCFDWFKWTAYMFTHDGLNELVFMPGSSRKTISRLWCEEVK*