3300006746: Human stool microbial communities from NIH, USA - visit 1, subject 823052294

Overview

Basic Information

• IMG/M Taxon OID: 3300006746
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052559 | Ga0101796
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 823052294
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 108332215
• Sequencing Scaffolds: 7
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F055715	Metagenome	138	N
F080163	Metagenome	115	N
F088920	Metagenome	109	Y
F090515	Metagenome	108	N
F094005	Metagenome / Metatranscriptome	106	N
F097493	Metagenome	104	Y
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101796_100047	Not Available	82103
Ga0101796_103331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	5029
Ga0101796_107920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2328
Ga0101796_108904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	2103
Ga0101796_111107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1718
Ga0101796_113512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1431
Ga0101796_129067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	676

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101796_100047	Ga0101796_10004710	F094005	MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKKGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKHNE*
Ga0101796_100047	Ga0101796_1000473	F044555	MKTTKPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNIPTVPDLEKPIEIQVSTTQQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKGTISRFQAQYNIQEINPYLQNILQNPEDLVSLSQHHRR*
Ga0101796_100047	Ga0101796_1000477	F080163	MKIIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNELKEKKNNFCDAKQFLESINDFDKILFVIITYMKIYFDLCKNYSKISLHVHLVQFDFTTSILIQGFYNYTHRDLSFSTKLESQVLNSEIELLQEKLDLIREEICELIGIDPNLEKQGHEDNYVFNLNIESDNQIGFFLQETEL*
Ga0101796_100047	Ga0101796_1000479	F032312	MPKIKDYDEDLSAPKFLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCFGFTGIKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS*
Ga0101796_103331	Ga0101796_1033312	F032286	MVKWVYQIVTPVRRRALIFDTRLFAGNAADDALVTGNTRSFCRLMCLCVKRRNVKLDSKRRSLPDSALFHADNRTEQKTILPFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENALKNADFHAHGQDRERAEI*
Ga0101796_107920	Ga0101796_1079202	F097493	MYKFYSKNGTAQFYERGVEIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMDTEIAKIQHTSITFKQPTSEQLSQIQAKTYNSMSELKQHVQSVMNGDETMSQDEINAMLMLQIAELKAGVDGE*
Ga0101796_108904	Ga0101796_1089041	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEVNIKSINRISSNIMQITFTV*
Ga0101796_108904	Ga0101796_1089044	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNLYNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDDFYNYSNASNIHYEGGKFPSMLTIQLFNLEF*
Ga0101796_111107	Ga0101796_1111074	F055715	LTKANEFDKINELLIERTAKKFKRASKNKLKKFLTNEKFCDKINELIRVGTAKILDN*
Ga0101796_113512	Ga0101796_1135122	F090515	VTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS*
Ga0101796_129067	Ga0101796_1290671	F088920	VSANLHHYPAFGAGVILHLILHFSQKVAIFAPKRAFSLLFVPTLFFAGLSVLSPQTSPKISGQASLYQPWLSPYCLFKDQLEMR*