3300006743: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159207311

Overview

Basic Information

• IMG/M Taxon OID: 3300006743
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052558 | Ga0101795
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159207311
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 88414233
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F101360	Metagenome	102	N
F103434	Metagenome	101	N
F105377	Metagenome	100	Y
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101795_100004	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	257750
Ga0101795_100147	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	44836
Ga0101795_100539	All Organisms → Viruses	17932

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101795_100004	Ga0101795_100004242	F105380	MSILELDSSQYVKQGRIFKKFDSALLDSYMDGRQTEYSINLSELDDQISDGIVYADHEGKMIYKFGAKKILQTAITNGLTITGLASEFKMKHYSFWVPDLYFISYSSFNPNSDLYIAYRSKDAKKICLTNIWSGSGNVDFYSPNGSRLVYNRLCKGRMMDDISADDYEAWKRTPVNRASNFVNKFISARGNSDLDFISNSIRSNVANNIKGYAEFLASITKEQENVNTYEEFIEWTKNTNWLK*
Ga0101795_100147	Ga0101795_10014735	F103434	VVGFRPRRGRYLENGPHVVEVTLAVVKEGRTGRRFERGDTFTIDKVLVQPSAGNALKATENRVIRGDLTDETILKIFGTGRKWPGGPHSWVKIIKGPDSLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR*
Ga0101795_100147	Ga0101795_10014766	F101360	VMSKEDALRRAAVAAHVAKVASQEKKRALAELEEVMAPGDTSRPMIDGLQIGTVSVSSPAPKYQVVDEGALVAWLEWNKPDAVHKVPAPWFTSAAALDGFIKQTGEIPDGVEVVKGDPRISVRISTAQADAIQELIESGDIRMIEAAGD*
Ga0101795_100539	Ga0101795_1005393	F105377	MEVRSEVRDFDDLPLLTPEEAFERAWEEGGSAHPVFDRGYRIRDLSSWKAVETLLRQNDVPDITVASFGLKRFEEILDAIAMLHERGWHLWQTATNVYVGGERRTVQAIRAHYRGD*