3300006720: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP2618 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006720
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0092409 | Ga0031675
• Sample Name: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP2618 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 133027513
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota	1
Not Available	4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Northeast of Antigua and Barbuda, North Atlantic Ocean
• Coordinates
  • Lat. (^o): 19.99
  • Long. (^o): -52.64
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005911	Metagenome / Metatranscriptome	386	Y
F010768	Metagenome / Metatranscriptome	299	Y
F030135	Metagenome / Metatranscriptome	186	Y
F070259	Metagenome / Metatranscriptome	123	Y
F090441	Metatranscriptome	108	N
F090442	Metagenome / Metatranscriptome	108	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0031675_1007969	All Organisms → cellular organisms → Eukaryota	518
Ga0031675_1014797	Not Available	732
Ga0031675_1268357	Not Available	639
Ga0031675_1274248	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	546
Ga0031675_1327403	Not Available	650
Ga0031675_1348200	Not Available	953

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031675_1007969	Ga0031675_10079691	F090442	TVDTSVMNEPNEAIVFHSWKASGKSGIRRGIPANPRKCIGKNVRFTPINVVQKWIFPRTSG*
Ga0031675_1014797	Ga0031675_10147971	F030135	ATLSSFTDIGHATFVGCQFPDAILPGEEAIDLVAGPLN*
Ga0031675_1268357	Ga0031675_12683571	F005911	ATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSIKAKIDGADINQARLGSGDEDQIEAPINELFHNGNFIKLSEMVKKAVIIVSDDPTATARKGYDIGYDTENSGVLIKFAAADGNVIQPDQGDADDTIVADVHLFVNLAGTADTDANAPYVDGTPFYYILMDATTAGLADSLETINSTIYPTGILATNGGGPQAEVSVVLPQDSED*
Ga0031675_1274248	Ga0031675_12742482	F010768	MPDINSPQITNAILEGARTMCEVLRGGYIVHPDPPPNSVITERIRSIYERNKINIEKLFILG
Ga0031675_1327403	Ga0031675_13274031	F070259	MKSESLVIVNHDVTVNDISNFAHTAHHARRVVTAGNFIMS*
Ga0031675_1348200	Ga0031675_13482001	F090441	EVWELATLSFPDSLALGALITRRVIVGCQFPDAASCRKNDCDTFRSHSGT*