3300006719: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP0728 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006719
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0092401 | Ga0031667
• Sample Name: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP0728 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 122713255
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
Not Available	4
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Sordariales → Sordariaceae → Neurospora → Neurospora crassa	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -31.83
  • Long. (^o): 6.86
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006550	Metagenome / Metatranscriptome	370	N
F016280	Metagenome / Metatranscriptome	248	N
F025846	Metagenome / Metatranscriptome	200	Y
F030053	Metatranscriptome	186	Y
F041212	Metagenome / Metatranscriptome	160	N
F042932	Metagenome / Metatranscriptome	157	N
F049945	Metagenome / Metatranscriptome	146	Y
F050311	Metagenome / Metatranscriptome	145	Y
F076161	Metagenome / Metatranscriptome	118	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0031667_1001517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	887
Ga0031667_1012623	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	950
Ga0031667_1013105	Not Available	997
Ga0031667_1018191	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161	812
Ga0031667_1237048	Not Available	878
Ga0031667_1280932	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Sordariales → Sordariaceae → Neurospora → Neurospora crassa	591
Ga0031667_1313777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	630
Ga0031667_1327033	All Organisms → Viruses → Predicted Viral	1035
Ga0031667_1336706	Not Available	1260
Ga0031667_1343937	Not Available	715

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031667_1001517	Ga0031667_10015172	F076161	PRNRRAEAHRFMKSINFSSRCPKTGFRAFAEKPVAKSLLLLQFGGQKMPPQRASIPNRLTAWTVPQIAADPKECSNLHSSPTNPDAATGKPV*
Ga0031667_1012623	Ga0031667_10126231	F025846	TVNLKAVPMVNLTVAMDLVSMAHGHVTVMVTALMAQMKLTVLLHHVKIRVYGIVVMDNVSQHHMYVMAQVNSVTQAGLQTVLMVQMKA*
Ga0031667_1013105	Ga0031667_10131052	F042932	ITKSDEEEQISYENTVAKSIDTLADVVQSIAESQQGVEKAISTIVERVKALETPSDLPLSPKGTQGGDDVGAKVTAPNDPYPVGDQVGLDSDRRSKNPPKKDPAGLKMQEKPVNKAVEDEPEEVVEESRPEMVTKSQHEFSTETPRPGSAIETVDKSFTKDFSPILKDAREQGYEGLNIVAQNILSGKYYKPTPEEIGGF*
Ga0031667_1018191	Ga0031667_10181912	F025846	PAVLMVNLTVVPMVVHMVSASMAHGHVTAWLIAMTAQTKLTVLLHHVKTRVSGIVAMANVFQHHMYVMAQVNFVTQAGVLTVLMVQMKA*
Ga0031667_1237048	Ga0031667_12370481	F041212	KLFVRDGRAMSKAPFWHKNFCLEMFEDRQTRPFETRIWSFVAPIEEDPVGSRVHVFEDIRIT*
Ga0031667_1280932	Ga0031667_12809321	F016280	ITSTEVDTRNVFDHASAELAKHGLDAPPTELKKLLDVLQFKPRRLVKCGLAPPKALKNTLKGDEAEEPEDVYVVEMAEALAIEDEPKPETTGLAALQKTANEAAASLDKEADVTLDDAALAAKLQAEEYGNHDVVLEAVTGRGIKLDSNTLHSLLRILYCRPARFVQLGLVEDIKAARQAFKLGGKACANEWFRNKG
Ga0031667_1313777	Ga0031667_13137771	F050311	MKALRTKICAYAIALLASIGFATPSLGGSSEFAGIFIAAHAELNVIAIDGTHTDGQTHATDQLGVTQGTIGGFAPTGGLEIGFNLPLGDTFFVTLGYADGGGKTAAIAKSKSPDGNSDVTIHASNPSWFYIAPSISVFDNSAVYFKIGQ
Ga0031667_1327033	Ga0031667_13270331	F030053	HVRGSSIEIKTNLGGGIKINAQRGDNSKGGRDIQIRTEKAGKQMMKIDINTEKTVNDNEIKLKLHDSVEIDEDSMLYRKIVRNYRLLTPFSKRTGDFEIYVNKQSKNVLLNKFYVKGEVKKDTQTVMKALLTTNEKPYKMSLYMPALLNKIYRNMDNYEVTVNHQPGQLLEVKANGKKFTGFKIARVGGGNNREFEINGKKLGSGDYELTDNSFKTKITIADGNWIEPKITWQGRLPNNAREAESFFLKNSLTADVKGSKRHFNADLDWTMDKPDFDFSTPLNCKMNFNMAGEGPNWGTYSISRDVKAAVANKVIKLAVNGDASFTKGVFAKISPVTTDVDLKY
Ga0031667_1336706	Ga0031667_13367062	F006550	MQAKINKREIDYKGQQLWLNPVDKTVYATDGAPTYSFSEVNGTPIYNYNSHFDAVKTAKDKLGTSYYHDAFVDPEFKSLAEEYVSDVKSGGRQRQAALRSSVNSAVDIVNVWETVLGKRDRVYAGKNLAKEVAVPNLLISIDTVTKFTGMEKLDEGMRARVKELPYTRATFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVIDVVETNTAQAAIAVWDTFVASTDRSTGDPTIDIGIASLNIEGSGVGGRLNRVGMHQLTFAKFTGNSFLRGVASIGPRDYNYEPGTSELVGIPGIGLVLDNGIKQGDVHCVDTELEPNCALFQGPQRVGSQHDEETGDDKYFIIDYHLAAKIQSETGRLITG
Ga0031667_1343937	Ga0031667_13439371	F049945	FSTDITIGDNTGFGSPYTGLALAGEDWDLSLNLSDGNVNVEEAKYNWAISDAITATFGSQAEPYGIAWGSHRPSGNSFVSVPRDHSISNGVGVSAAAYGVGANAFYGDDNYWAARASYDVSALGINSTVGLSVNSSDAQLIDASTNGSALGIPYESSFEYDLANDGAYWLRGVVTPDIAKGAYGIIGYNSDEEVVYGIGYNASDNFKVATELSGDGDTVIRFSYSF*