3300006712: Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP1602 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006712
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0092427 | Ga0031693
• Sample Name: Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP1602 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 88391986
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Caldalkalibacillus → Caldalkalibacillus thermarum → Caldalkalibacillus thermarum TA2.A1	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Pacific Ocean
• Coordinates
  • Lat. (^o): -11.24
  • Long. (^o): -172.63
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000086	Metagenome / Metatranscriptome	2462	Y
F000371	Metagenome / Metatranscriptome	1220	Y
F001679	Metagenome / Metatranscriptome	653	Y
F030135	Metagenome / Metatranscriptome	186	Y
F063613	Metatranscriptome	129	N
F081237	Metatranscriptome	114	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0031693_1006278	Not Available	749
Ga0031693_1009120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Caldalkalibacillus → Caldalkalibacillus thermarum → Caldalkalibacillus thermarum TA2.A1	2230
Ga0031693_1169750	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	534
Ga0031693_1202480	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae	503
Ga0031693_1223953	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	618
Ga0031693_1228678	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	577

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031693_1006278	Ga0031693_10062781	F030135	PKNREELATLSSFTDIGHATFVGCQFPDAILPGGEAIDLVAGPLN*
Ga0031693_1009120	Ga0031693_10091202	F001679	MSWRQEAMKGVEGCDKPGEAVKRALIPGFPNYRMLNT*
Ga0031693_1157224	Ga0031693_11572241	F000086	TMELQEDVGEKVRIIQDAIKTEADLLPQGDQVPKDAQDYKDELKRIEEYVLDLQKRVMTTCEHFSEDVKYWAEYKTGVREFRPWLEASESKAKEGLSKPSTLDEANALFAAVNNFDQNCLKYRKICENAETASLKMTTHKEADDEVKELKDRYAKVKAVSDEWMKKADTLLKEWKLLDNTVNELNSWVAKDRGESSEANFSLEKMESTLGELKNIFKQKEKLVEDL*
Ga0031693_1169750	Ga0031693_11697501	F000371	LYARCAKECDNFSEDVKYWAQYKTGIKEFGPWLTNAEQRSLEGLSKPSTLDEANAMFNTVMEFDKACLKHLKILEEAAAAANHMTTHKEADDEVTALKERYGKVKQVSDEWMKKGDTLVKEWKLLDNTVNELNSWVAKDRGAETEQAFSLEKMESTLGELKNIFKEKERLVENL*
Ga0031693_1202480	Ga0031693_12024801	F081237	MSRTVLDLEEWELVLAKMHRHHANVAQEVAIIVQTIRKEMKSELVPLAEEKATYGKIVKSAIRELWALEYEIEEIQTEFAKGIGSIDIGNLTDDFVEDVMLQSKPLQGILMAIRIRQKTKMEEIKTKYWEVIKDLEPLKQPRPP
Ga0031693_1223953	Ga0031693_12239531	F000371	DVIKKNIAVEEDLLPQGEKVPQDAQDYKDELKRIKDFVDNLYQKVMKECDNFSEDVKYWAEYKTGIKEFRPWLEKAETHSTDGLAKPQTLDEANAMYANVKSFDDGCLKHLKILEDAAAAANKMTTHKEADSEVAELKARYEKVKLIADEWVKKVDTLVKEWKLLDNTVTELNSWVAKDRGAEGEQNFSLEKMESTLGELKNIFKE
Ga0031693_1228678	Ga0031693_12286781	F063613	LLKKRGGERGSGLLVGLALKGSGGLLALVVGGSTNLSLLLQSLDGILVLPSDLVGQTTEASEVAARSESQHTEGLRANHTVDLVVRRGDTLEDLEVSQSGGTTGGLVGDHSTDGSPENLRGSTEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDVLATNNNDLLSGQELLGNSGGKTAQKVTLSVNHDS